Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   R6Y88_RS13895 Genome accession   NZ_CP137687
Coordinates   2749304..2749993 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain YT-4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2744304..2754993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS13875 tagO 2744870..2745946 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  R6Y88_RS13880 tagV 2746019..2747194 (-) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  R6Y88_RS13885 yvyE 2747194..2747847 (-) 654 WP_003227979.1 YigZ family protein -
  R6Y88_RS13890 degS 2748064..2749221 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  R6Y88_RS13895 degU 2749304..2749993 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  R6Y88_RS13900 fakBA 2750091..2750936 (+) 846 WP_003227986.1 DegV family protein -
  R6Y88_RS13905 comFA 2751042..2752433 (+) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  R6Y88_RS13910 comFB 2752493..2752789 (+) 297 WP_015483764.1 late competence protein ComFB -
  R6Y88_RS13915 comFC 2752753..2753475 (+) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  R6Y88_RS13920 yvyF 2753549..2753968 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  R6Y88_RS13925 flgM 2754049..2754315 (+) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  R6Y88_RS13930 flgN 2754331..2754813 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=899740 R6Y88_RS13895 WP_003219701.1 2749304..2749993(+) (degU) [Bacillus subtilis strain YT-4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=899740 R6Y88_RS13895 WP_003219701.1 2749304..2749993(+) (degU) [Bacillus subtilis strain YT-4]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1