Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   R6Y88_RS12810 Genome accession   NZ_CP137687
Coordinates   2527828..2527947 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain YT-4     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2522828..2532947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS12790 - 2523499..2524062 (-) 564 WP_015483840.1 hypothetical protein -
  R6Y88_RS12795 - 2524055..2524702 (-) 648 WP_015384940.1 ABC transporter ATP-binding protein -
  R6Y88_RS12800 - 2526178..2526864 (-) 687 WP_236822444.1 hypothetical protein -
  R6Y88_RS12805 - 2527124..2527600 (-) 477 WP_015384936.1 hypothetical protein -
  R6Y88_RS12810 phrF 2527828..2527947 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  R6Y88_RS12815 rapF 2527931..2529076 (-) 1146 WP_015384935.1 response regulator aspartate phosphatase RapF Regulator
  R6Y88_RS12820 - 2529079..2529309 (+) 231 WP_015483838.1 hypothetical protein -
  R6Y88_RS12825 ywhK 2529306..2530661 (+) 1356 WP_015384933.1 YncE family protein -
  R6Y88_RS12830 ywhL 2530701..2532074 (+) 1374 WP_015483837.1 YncE family protein -
  R6Y88_RS12835 albG 2532080..2532781 (-) 702 WP_015384931.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=899734 R6Y88_RS12810 WP_009968329.1 2527828..2527947(-) (phrF) [Bacillus subtilis strain YT-4]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=899734 R6Y88_RS12810 WP_009968329.1 2527828..2527947(-) (phrF) [Bacillus subtilis strain YT-4]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487