Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   R6Y88_RS08995 Genome accession   NZ_CP137687
Coordinates   1788486..1788935 (+) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus subtilis strain YT-4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1783486..1793935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS08975 hxlR 1784700..1785062 (-) 363 WP_015482783.1 transcriptional activator HxlR -
  R6Y88_RS08980 hxlA 1785294..1785926 (+) 633 WP_015482782.1 3-hexulose-6-phosphate synthase -
  R6Y88_RS08985 hxlB 1785932..1786489 (+) 558 WP_015482781.1 6-phospho-3-hexuloisomerase -
  R6Y88_RS08990 tlpC 1786600..1788320 (+) 1721 Protein_1760 methyl-accepting chemotaxis protein TlpC -
  R6Y88_RS08995 nucA/comI 1788486..1788935 (+) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  R6Y88_RS09000 nin/comJ 1788962..1789360 (+) 399 WP_015382736.1 DNA-entry nuclease inhibitor Regulator
  R6Y88_RS09005 bglC 1789397..1790830 (-) 1434 WP_015382735.1 6-phospho-beta-glucosidase -
  R6Y88_RS09010 yckD 1790983..1791315 (-) 333 WP_015252849.1 YckD family protein -
  R6Y88_RS09015 yckC 1791397..1791828 (-) 432 WP_046340202.1 RDD family protein -
  R6Y88_RS09020 - 1791878..1792075 (-) 198 WP_144052033.1 hypothetical protein -
  R6Y88_RS09025 yckB 1792237..1793100 (+) 864 WP_015482776.1 transporter substrate-binding domain-containing protein -
  R6Y88_RS09030 yckA 1793110..1793790 (+) 681 WP_015382730.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=899723 R6Y88_RS08995 WP_014475770.1 1788486..1788935(+) (nucA/comI) [Bacillus subtilis strain YT-4]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=899723 R6Y88_RS08995 WP_014475770.1 1788486..1788935(+) (nucA/comI) [Bacillus subtilis strain YT-4]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGATATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987