Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   R6Y96_RS00380 Genome accession   NZ_CP137642
Coordinates   74840..77200 (-) Length   786 a.a.
NCBI ID   WP_318621475.1    Uniprot ID   A0AAX4FVE0
Organism   Methanoculleus receptaculi strain DSM 18860     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 69840..82200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y96_RS00365 (R6Y96_00365) - 71205..72677 (+) 1473 WP_318621469.1 cobyric acid synthase -
  R6Y96_RS00370 (R6Y96_00370) epdK 72869..73918 (-) 1050 WP_318621471.1 type II secretion system F family protein Machinery gene
  R6Y96_RS00375 (R6Y96_00375) epdJ 73920..74843 (-) 924 WP_318621473.1 type II secretion system F family protein Machinery gene
  R6Y96_RS00380 (R6Y96_00380) epdL 74840..77200 (-) 2361 WP_318621475.1 type II/IV secretion system ATPase subunit Machinery gene
  R6Y96_RS00385 (R6Y96_00385) - 77193..77825 (-) 633 WP_318621477.1 hypothetical protein -
  R6Y96_RS00390 (R6Y96_00390) - 78157..78948 (+) 792 WP_318621479.1 A24 family peptidase C-terminal domain-containing protein -
  R6Y96_RS00395 (R6Y96_00395) hisI 78954..79319 (+) 366 WP_318621480.1 phosphoribosyl-AMP cyclohydrolase -
  R6Y96_RS00400 (R6Y96_00400) - 79343..81232 (+) 1890 WP_318621481.1 PINc/VapC family ATPase -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88937.45 Da        Isoelectric Point: 4.8095

>NTDB_id=899690 R6Y96_RS00380 WP_318621475.1 74840..77200(-) (epdL) [Methanoculleus receptaculi strain DSM 18860]
MSKNGDEERELIASVRNLLSRPQKLGFGEEDAIANDPASELFIDTWWGERPEPVPVHVRKDDEIRALIESVARTGSAAER
RTTTAEDPIQALLKRIEGQGPGIVEEPVSSYVEVPGEAGTALESPAEPPVVEKPARPEPAFTPAASRHPVHAGIRERRWG
WRETDESGTYEETFEGVRSVDELGNLADLILPRSATFSIDELSINRNEHFYDFVDNARVVSEFDELFSRSYTPSSFAAAA
AEVAIPAEEVPKPRFGVIRKFQVPTLEQKVEDYNPLLHGPLVDLTLHPSLGVEEIELYPVNEPYAYIRVTYDTSTHEYTY
HVIEPVLTPGERDLFQEIRERLFETLNITCRNLSREEARRVLRDAVNTIIADYGIRLDPVGREKVLYQVEKEFLGDGLID
PIMHDKYVEDISCDGVGSAIFVYHTTYESLRTNLVYTDAAELDSFVTKLAQRAGKYISIAEPMLDATMNDGSRIQMTLGS
EVTAHGSTFTIRKFRDEPITPTDLIEWHTFSPLGIAFLWLAVENGKSCIFAGGTASGKTTTLNAISLFIPPLAKIITLED
TRELKLPHPNWIPSVTRDSFSQDGRGEIDMYELLRAALRQRPEYLLVGEVRGREALTLFQAMSTGHVTYATMHADSVASA
VHRLENPPIGVPRNMLSALDLMSIQVQARVGGQRIRRNKHLIEILDVDPRTNELITNEVFRWHPVTDEIRYSGKSYILEQ
IMEDRGWSEERMREELKRRQEVLEWMRIKKIRHYQDVSKILISYFRDPEAVIQRVRADLYGEGGPA

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=899690 R6Y96_RS00380 WP_318621475.1 74840..77200(-) (epdL) [Methanoculleus receptaculi strain DSM 18860]
ATGAGTAAGAATGGTGACGAGGAGCGCGAGTTGATAGCGTCGGTCAGAAACCTCCTCTCCCGGCCACAGAAACTGGGTTT
TGGGGAGGAGGATGCCATAGCGAATGATCCTGCCAGCGAACTCTTTATCGATACGTGGTGGGGGGAACGCCCGGAACCGG
TGCCGGTGCATGTCCGGAAGGATGATGAGATCAGGGCTCTCATCGAGAGCGTGGCAAGAACAGGAAGTGCGGCGGAACGG
CGCACAACCACGGCTGAAGACCCGATCCAGGCTCTCCTCAAGCGGATCGAGGGGCAGGGGCCGGGTATTGTTGAGGAACC
GGTCTCTTCTTATGTGGAGGTGCCCGGTGAGGCCGGCACCGCGCTGGAATCGCCCGCTGAACCGCCGGTGGTGGAGAAGC
CGGCCCGGCCGGAGCCGGCGTTCACGCCCGCCGCTTCGCGCCATCCCGTTCATGCAGGCATCCGCGAGCGCAGATGGGGA
TGGCGGGAGACCGATGAATCCGGCACATATGAAGAGACTTTTGAGGGGGTGAGATCGGTCGATGAACTCGGGAACCTTGC
AGACCTGATCCTCCCCAGGAGCGCTACCTTCTCCATCGATGAACTGAGCATCAACCGCAATGAGCACTTCTATGACTTTG
TCGACAACGCCCGGGTCGTATCGGAGTTTGACGAACTATTCTCCCGGTCATACACGCCCTCATCTTTCGCCGCTGCAGCC
GCAGAGGTGGCAATCCCTGCCGAGGAGGTTCCAAAACCCCGGTTTGGGGTTATCAGGAAGTTCCAGGTGCCCACCCTCGA
GCAGAAGGTCGAAGACTACAACCCCCTCCTGCATGGACCCCTCGTCGACCTCACCTTGCACCCCTCCCTGGGGGTGGAGG
AGATTGAGCTCTACCCGGTGAACGAACCCTACGCCTACATCCGCGTGACCTATGACACCTCGACGCATGAGTACACCTAC
CACGTCATAGAACCGGTACTCACGCCAGGGGAGCGTGATCTCTTCCAGGAGATCAGGGAGCGCCTCTTTGAGACCCTCAA
TATCACCTGCCGGAACCTCAGCCGCGAGGAGGCGCGCAGGGTGTTGCGTGATGCGGTTAACACGATCATCGCCGATTATG
GGATTCGCCTCGATCCTGTCGGCCGGGAGAAAGTCCTCTACCAGGTGGAGAAGGAGTTTCTTGGCGATGGTCTGATCGAT
CCAATTATGCATGACAAGTATGTCGAGGATATCTCCTGTGACGGTGTCGGTAGCGCTATATTCGTCTACCACACAACCTA
CGAGTCTCTGAGGACGAATCTTGTATACACCGACGCAGCGGAGCTCGACTCCTTCGTCACGAAACTTGCGCAGCGGGCGG
GGAAGTACATCTCGATCGCCGAACCGATGCTGGATGCCACCATGAACGATGGCTCGCGCATCCAGATGACTCTCGGTTCA
GAGGTGACCGCTCACGGCTCGACGTTCACCATCCGGAAGTTCCGGGATGAACCGATCACTCCAACAGACCTCATCGAGTG
GCACACCTTCTCCCCGCTCGGGATCGCTTTCCTCTGGCTGGCAGTTGAGAACGGTAAATCATGCATCTTTGCCGGCGGTA
CGGCTTCCGGGAAGACCACGACGTTGAACGCCATATCGCTCTTTATCCCGCCGCTTGCAAAGATAATCACCCTCGAGGAC
ACCCGGGAACTTAAACTGCCCCACCCGAACTGGATCCCGAGTGTCACCCGTGACTCGTTCTCACAGGATGGACGGGGGGA
GATCGATATGTATGAACTGCTCCGCGCCGCCCTCCGGCAGCGCCCGGAGTACCTCCTGGTCGGCGAGGTTCGCGGTCGCG
AGGCCCTGACCCTCTTCCAGGCCATGAGCACCGGTCATGTAACCTACGCGACGATGCACGCAGATTCGGTGGCAAGTGCG
GTCCATCGTCTTGAGAACCCGCCGATCGGTGTACCCAGGAACATGCTCTCTGCGCTTGACCTTATGTCCATCCAGGTGCA
GGCCCGGGTGGGCGGCCAGCGGATCCGGCGCAACAAACACCTCATCGAGATACTGGACGTCGATCCCCGGACGAACGAAC
TGATCACAAACGAGGTCTTCCGGTGGCACCCGGTGACTGATGAGATCCGGTATTCCGGCAAATCCTACATCCTGGAGCAG
ATCATGGAGGACCGGGGCTGGAGCGAAGAGCGGATGCGCGAAGAGTTGAAACGGCGTCAGGAAGTGCTTGAGTGGATGCG
CATCAAGAAGATCAGACATTACCAGGATGTTAGCAAGATACTGATCTCCTACTTCAGGGACCCGGAGGCGGTCATCCAGC
GGGTGCGCGCGGACCTATATGGGGAGGGGGGTCCTGCATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(405-658)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

74.763

93.766

0.701