Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   R6Y96_RS00375 Genome accession   NZ_CP137642
Coordinates   73920..74843 (-) Length   307 a.a.
NCBI ID   WP_318621473.1    Uniprot ID   A0AAX4FV48
Organism   Methanoculleus receptaculi strain DSM 18860     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 68920..79843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y96_RS00355 (R6Y96_00355) yciH 69151..69456 (-) 306 WP_214022729.1 stress response translation initiation inhibitor YciH -
  R6Y96_RS00360 (R6Y96_00360) - 69499..71157 (-) 1659 WP_318621467.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -
  R6Y96_RS00365 (R6Y96_00365) - 71205..72677 (+) 1473 WP_318621469.1 cobyric acid synthase -
  R6Y96_RS00370 (R6Y96_00370) epdK 72869..73918 (-) 1050 WP_318621471.1 type II secretion system F family protein Machinery gene
  R6Y96_RS00375 (R6Y96_00375) epdJ 73920..74843 (-) 924 WP_318621473.1 type II secretion system F family protein Machinery gene
  R6Y96_RS00380 (R6Y96_00380) epdL 74840..77200 (-) 2361 WP_318621475.1 type II/IV secretion system ATPase subunit Machinery gene
  R6Y96_RS00385 (R6Y96_00385) - 77193..77825 (-) 633 WP_318621477.1 hypothetical protein -
  R6Y96_RS00390 (R6Y96_00390) - 78157..78948 (+) 792 WP_318621479.1 A24 family peptidase C-terminal domain-containing protein -
  R6Y96_RS00395 (R6Y96_00395) hisI 78954..79319 (+) 366 WP_318621480.1 phosphoribosyl-AMP cyclohydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34225.09 Da        Isoelectric Point: 6.2571

>NTDB_id=899689 R6Y96_RS00375 WP_318621473.1 73920..74843(-) (epdJ) [Methanoculleus receptaculi strain DSM 18860]
MNSYERFCFNLLGHRLKDKRADYVKLRNDMMGARMTTPFEAYLATAYVTSIMVGLVAAVLIGLLTYILRVPDMIVYRGAV
PEFLYALNDYKMVLGTIVITIIALLVFGGITYIVFIIYPGILAGERRRNIDATLPYAINYVTAMSSAGITPDEVFRSLGQ
SQIYGESAVEARYITRETDFFGKDLLEALRAVAQATPSDRMREFLQGAVASISSGSNLTEYFRTKAHQYTLENHQQQKAF
LETLGLVAESYVTAIVAGMLFLIILQSVMTILSGDSNPLFLYIIIYLLVPFGSLMFVILISSITPEV

Nucleotide


Download         Length: 924 bp        

>NTDB_id=899689 R6Y96_RS00375 WP_318621473.1 73920..74843(-) (epdJ) [Methanoculleus receptaculi strain DSM 18860]
ATGAACAGTTACGAGCGTTTCTGTTTCAACCTTCTCGGCCACAGATTAAAGGATAAACGGGCGGATTATGTTAAGCTCCG
CAACGATATGATGGGGGCGCGGATGACGACGCCATTCGAGGCCTACCTTGCGACCGCCTATGTCACATCGATCATGGTTG
GTCTCGTAGCGGCCGTTCTGATCGGGCTCCTGACATATATCCTTCGCGTCCCTGATATGATAGTCTACCGTGGGGCGGTC
CCGGAGTTCCTCTATGCTTTGAATGACTACAAGATGGTGCTTGGCACCATCGTCATCACGATCATCGCCCTCCTGGTATT
CGGCGGGATCACCTACATCGTCTTCATCATCTACCCGGGTATACTGGCAGGGGAGCGCCGCCGGAACATCGATGCCACCC
TCCCGTACGCCATAAATTATGTTACAGCCATGTCCTCGGCGGGAATAACACCAGATGAGGTCTTCCGGTCACTCGGTCAG
AGTCAGATATATGGTGAGAGCGCCGTAGAGGCACGTTACATCACCCGCGAGACCGACTTCTTCGGTAAAGACCTCCTTGA
GGCCCTGCGGGCGGTTGCGCAGGCGACGCCGAGTGACCGGATGCGGGAGTTCCTCCAGGGAGCGGTTGCAAGCATCTCCA
GCGGGAGTAACCTGACAGAGTACTTCCGCACGAAGGCACACCAGTATACGCTTGAGAACCACCAGCAGCAGAAGGCGTTC
CTGGAGACGCTCGGGCTGGTCGCGGAGTCCTACGTCACCGCAATCGTTGCGGGCATGCTCTTTTTGATCATCCTCCAGTC
GGTCATGACGATCTTATCGGGCGACTCGAACCCGCTCTTCCTGTATATAATCATCTACCTGCTTGTGCCCTTCGGGAGCC
TGATGTTTGTCATCCTGATCAGTTCAATAACGCCGGAGGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

84.691

100

0.847