Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   R6Y96_RS00370 Genome accession   NZ_CP137642
Coordinates   72869..73918 (-) Length   349 a.a.
NCBI ID   WP_318621471.1    Uniprot ID   A0AAX4FUX7
Organism   Methanoculleus receptaculi strain DSM 18860     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 67869..78918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y96_RS00340 (R6Y96_00340) - 67924..68421 (+) 498 WP_318621463.1 YkgJ family cysteine cluster protein -
  R6Y96_RS00345 (R6Y96_00345) - 68414..68677 (+) 264 WP_318621464.1 hypothetical protein -
  R6Y96_RS00350 (R6Y96_00350) - 68682..69011 (-) 330 WP_318621465.1 type II secretion system protein E -
  R6Y96_RS00355 (R6Y96_00355) yciH 69151..69456 (-) 306 WP_214022729.1 stress response translation initiation inhibitor YciH -
  R6Y96_RS00360 (R6Y96_00360) - 69499..71157 (-) 1659 WP_318621467.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -
  R6Y96_RS00365 (R6Y96_00365) - 71205..72677 (+) 1473 WP_318621469.1 cobyric acid synthase -
  R6Y96_RS00370 (R6Y96_00370) epdK 72869..73918 (-) 1050 WP_318621471.1 type II secretion system F family protein Machinery gene
  R6Y96_RS00375 (R6Y96_00375) epdJ 73920..74843 (-) 924 WP_318621473.1 type II secretion system F family protein Machinery gene
  R6Y96_RS00380 (R6Y96_00380) epdL 74840..77200 (-) 2361 WP_318621475.1 type II/IV secretion system ATPase subunit Machinery gene
  R6Y96_RS00385 (R6Y96_00385) - 77193..77825 (-) 633 WP_318621477.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38388.78 Da        Isoelectric Point: 5.4024

>NTDB_id=899688 R6Y96_RS00370 WP_318621471.1 72869..73918(-) (epdK) [Methanoculleus receptaculi strain DSM 18860]
MGFKDLFDDLLNRNRPQPVDMPEEAPQPDPVVVRDEEILKRIQQRRKYQEGFYRFLKHPLRVMIEEPYTALFISVPAALL
LFIGGFVSIVTSYGFAAIFGTTMLDDVAVFAIIIAIVPFAILDLKESIRVSSVEASLPNFFRDVAGMNDSGMTLPHAIHI
VSEGDYGALTPHIRKLDTEMSWGVPFVEAIRRFGKAVSTPLAERSVELIAQASSAGGDVSEVLRAAAHDAYEFFNLKTER
KTGMMIYMIIILMSFFVFLFVIAVLSGTFLATMAEAGETVAASGSASAQSFMGSVDIFLYNRVFCHAALIQGFFSGLAAG
VMGEGRAVAGLKYSALMVLIAWVAFRFFL

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=899688 R6Y96_RS00370 WP_318621471.1 72869..73918(-) (epdK) [Methanoculleus receptaculi strain DSM 18860]
ATGGGATTTAAAGACCTTTTTGACGATCTTTTGAATCGAAACCGGCCGCAGCCGGTTGATATGCCGGAGGAGGCGCCTCA
GCCCGATCCGGTCGTGGTGCGGGACGAGGAGATCCTTAAGAGGATCCAGCAGCGGCGGAAGTACCAGGAAGGGTTCTACC
GCTTCCTCAAACATCCGCTCAGGGTGATGATTGAGGAGCCCTACACCGCCCTGTTTATATCCGTTCCTGCAGCTCTCCTC
CTCTTCATCGGTGGATTTGTAAGCATAGTGACGTCTTACGGTTTCGCGGCAATCTTCGGGACGACCATGCTTGACGATGT
CGCCGTATTCGCGATAATCATCGCCATCGTGCCTTTTGCCATCCTCGATCTCAAGGAATCGATTCGCGTATCGAGCGTCG
AGGCCTCTCTCCCGAACTTCTTCCGGGATGTGGCCGGGATGAACGATTCCGGTATGACGCTCCCACACGCCATACATATA
GTCTCGGAAGGCGATTACGGGGCACTCACACCCCATATCCGCAAACTCGATACTGAGATGTCCTGGGGCGTCCCGTTTGT
GGAGGCGATTCGCAGGTTCGGGAAGGCCGTGAGCACCCCGCTTGCGGAGCGGAGCGTCGAACTGATCGCTCAGGCAAGTT
CCGCGGGCGGCGATGTCAGCGAGGTGCTTCGGGCGGCTGCGCACGACGCCTATGAGTTTTTCAACCTGAAAACGGAGCGA
AAGACGGGGATGATGATCTACATGATCATCATCCTGATGTCGTTCTTCGTCTTCTTATTCGTCATCGCCGTGCTCTCAGG
TACTTTCCTTGCAACGATGGCGGAGGCTGGGGAGACTGTTGCGGCCTCAGGGTCAGCGTCCGCGCAGTCGTTTATGGGTA
GTGTGGATATCTTCCTCTACAACCGCGTCTTCTGCCATGCGGCGCTTATCCAGGGGTTCTTCTCAGGGCTTGCGGCGGGC
GTCATGGGCGAAGGACGGGCGGTCGCAGGGCTGAAGTACTCGGCGTTGATGGTGCTGATAGCCTGGGTTGCGTTCCGGTT
CTTCCTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(140-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

77.119

100

0.782