Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   R4Z09_RS29560 Genome accession   NZ_CP137640
Coordinates   5948746..5949132 (-) Length   128 a.a.
NCBI ID   WP_338450183.1    Uniprot ID   -
Organism   Niallia oryzisoli strain DSM 29761     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5943746..5954132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z09_RS29545 (R4Z09_29545) - 5944611..5946806 (-) 2196 WP_338450180.1 helix-turn-helix domain-containing protein -
  R4Z09_RS29550 (R4Z09_29550) - 5947092..5948090 (+) 999 WP_338450181.1 LysM peptidoglycan-binding domain-containing protein -
  R4Z09_RS29555 (R4Z09_29555) - 5948418..5948612 (-) 195 WP_338450182.1 hypothetical protein -
  R4Z09_RS29560 (R4Z09_29560) ssbB 5948746..5949132 (-) 387 WP_338450183.1 single-stranded DNA-binding protein Machinery gene
  R4Z09_RS29565 (R4Z09_29565) - 5949389..5949817 (+) 429 WP_338450184.1 YwpF family protein -
  R4Z09_RS29570 (R4Z09_29570) - 5949934..5950164 (+) 231 WP_338450185.1 hypothetical protein -
  R4Z09_RS29575 (R4Z09_29575) - 5950347..5950724 (-) 378 WP_338450186.1 hypothetical protein -
  R4Z09_RS29580 (R4Z09_29580) fabZ 5951089..5951526 (-) 438 WP_338453395.1 3-hydroxyacyl-ACP dehydratase FabZ -
  R4Z09_RS29585 (R4Z09_29585) - 5951741..5952007 (-) 267 WP_338450187.1 DNA-directed RNA polymerase subunit beta -
  R4Z09_RS29590 (R4Z09_29590) - 5952021..5952848 (-) 828 WP_338450188.1 flagellar hook-basal body protein -
  R4Z09_RS29595 (R4Z09_29595) - 5952895..5953728 (-) 834 WP_338453396.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14519.45 Da        Isoelectric Point: 7.2433

>NTDB_id=899682 R4Z09_RS29560 WP_338450183.1 5948746..5949132(-) (ssbB) [Niallia oryzisoli strain DSM 29761]
MINQVTLVGRLTKDPELRITPEGIAVTSVTLALNRQFRNQQGEYDADFVQCTIWKKTAENTVNYCSKGSLIGITGRIQTR
HYDNQEGRRIYITEVVADTVKFIGTKRSEDSIHHLEKEIPVPVSISQE

Nucleotide


Download         Length: 387 bp        

>NTDB_id=899682 R4Z09_RS29560 WP_338450183.1 5948746..5949132(-) (ssbB) [Niallia oryzisoli strain DSM 29761]
ATGATAAATCAAGTCACACTTGTAGGCAGACTGACAAAAGACCCTGAATTGCGGATTACCCCGGAAGGAATTGCGGTTAC
GAGCGTAACGTTAGCGCTCAATCGGCAATTTCGTAACCAGCAGGGTGAATACGATGCTGATTTCGTCCAATGCACGATTT
GGAAGAAGACGGCTGAAAACACCGTGAATTATTGCAGTAAAGGTTCGCTCATCGGCATAACGGGCCGGATCCAGACTCGT
CACTATGATAATCAAGAAGGACGCAGAATTTATATCACAGAAGTTGTCGCGGACACGGTAAAATTCATCGGCACGAAGCG
CTCTGAAGACTCCATCCACCATCTCGAAAAAGAAATACCTGTACCTGTTTCAATCAGTCAGGAGTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.162

86.719

0.539
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

82.813

0.477
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

82.813

0.437
  ssbA Streptococcus mutans UA159

38.931

100

0.398
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

82.813

0.375