Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   R4Z09_RS06475 Genome accession   NZ_CP137640
Coordinates   1305088..1307496 (+) Length   802 a.a.
NCBI ID   WP_338451521.1    Uniprot ID   -
Organism   Niallia oryzisoli strain DSM 29761     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1300088..1312496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z09_RS06455 (R4Z09_06455) - 1301525..1301944 (+) 420 WP_338451517.1 Rrf2 family transcriptional regulator -
  R4Z09_RS06460 (R4Z09_06460) - 1301978..1303123 (+) 1146 WP_338451518.1 cysteine desulfurase family protein -
  R4Z09_RS06465 (R4Z09_06465) mnmA 1303131..1304246 (+) 1116 WP_338451519.1 tRNA 2-thiouridine(34) synthase MnmA -
  R4Z09_RS06470 (R4Z09_06470) - 1304386..1305042 (+) 657 WP_338451520.1 tetratricopeptide repeat protein -
  R4Z09_RS06475 (R4Z09_06475) recD2 1305088..1307496 (+) 2409 WP_338451521.1 ATP-dependent RecD-like DNA helicase Machinery gene
  R4Z09_RS06480 (R4Z09_06480) - 1307634..1308104 (+) 471 WP_338451522.1 PRC-barrel domain-containing protein -
  R4Z09_RS06485 (R4Z09_06485) - 1308120..1308311 (+) 192 WP_338451523.1 hypothetical protein -
  R4Z09_RS06490 (R4Z09_06490) - 1308329..1308460 (+) 132 WP_338451524.1 YrzQ family protein -
  R4Z09_RS06495 (R4Z09_06495) - 1308585..1309688 (+) 1104 WP_338451525.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 802 a.a.        Molecular weight: 90991.24 Da        Isoelectric Point: 5.0873

>NTDB_id=899652 R4Z09_RS06475 WP_338451521.1 1305088..1307496(+) (recD2) [Niallia oryzisoli strain DSM 29761]
MEKQDSLDLYAEQGKFIKGKPIVTIFHNEQNLYTVLRIRVEETNENYDDKEAVVTGYFPKIHEQEVYIFYGEMKEHQKFG
LQFHASHFRKDIPQTKQGVVNYLSSELFKGIGKKTAEKIVDTLGENAITRILNHPSLLDQVPKLPPDKAKDLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMKIYQVYKELTIEVIQTNPYKLVEDVEGIGFARADELGHQQGITGSHPDRIKAGCLYILEQ
ECMQNGHVFVDAEHLLVSVQKLLEENKRNQIEFADITRELLKLEEEGKIIVENKRFYLPSLYFSEKGLVTSIKKLLEQTE
YADQFPESEFLLALGNLEERIGVQYAPTQKDAIQTALMSPLLLLTGGPGTGKTTVIKGIVELYAELHGCSLDPKDYKKEE
PFPFLLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFDHHEDNPLEGKILIVDETSMVDIWLANRLFKALPEHIQVI
LVGDEDQLPSVGPGQVLRDLLQSNVIPTIRLTDIYRQAEGSSIIELAHEIKKGKLPKDVSMQQADRSFFRCHTGQIANVI
EKVVLNAKKKGYTPRDIQVLAPMYKGPAGIDRLNEMLQEILNGNPDGSRKELVFGNTKYRVGDKVLQLVNQPDKHVFNGD
MGEVVSVFYAKENTEKQDMVVVSFEGVEITYTRQDLNQITLAYCCSVHKSQGSEFPIVILPIVKSYYRMLQRNLIYTAIT
RSKQFLILCGEEEALRLGVERADEQSRQTTLAEKLQEELQELKPKAGSIVEDLQTEELTYEEMMMNVDPMIGMENVNPYQ
FM

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=899652 R4Z09_RS06475 WP_338451521.1 1305088..1307496(+) (recD2) [Niallia oryzisoli strain DSM 29761]
GTGGAAAAGCAAGACTCACTTGATTTATATGCTGAACAGGGAAAGTTTATCAAAGGGAAACCGATTGTAACAATTTTTCA
TAACGAACAAAATTTATACACGGTTCTCAGGATCAGAGTCGAAGAGACAAATGAAAATTATGATGATAAAGAAGCTGTTG
TTACCGGCTATTTTCCGAAAATCCATGAACAGGAAGTTTATATTTTTTACGGAGAGATGAAGGAGCATCAAAAATTTGGC
CTTCAGTTTCATGCCAGCCATTTTCGCAAAGACATACCGCAAACAAAACAAGGGGTTGTCAACTACCTTTCAAGTGAACT
CTTTAAAGGGATTGGAAAGAAAACAGCTGAGAAAATCGTTGATACGCTTGGAGAAAATGCGATTACACGGATATTAAATC
ATCCTTCCCTCCTAGACCAAGTTCCCAAACTCCCGCCTGACAAAGCAAAGGACTTATATGACACACTGATGGAGCATCAA
GGGCTTGAGCAGGCAATGATCGCATTAAACCAATATGGCTTCGGTCCTCAATTATCGATGAAAATCTATCAGGTTTACAA
GGAATTAACGATAGAAGTTATCCAAACAAATCCGTATAAGCTGGTTGAAGATGTTGAGGGGATTGGCTTTGCTCGTGCTG
ATGAACTTGGTCACCAGCAAGGCATTACAGGTAGTCATCCAGACCGTATTAAAGCAGGCTGCCTTTATATATTAGAGCAG
GAATGTATGCAAAACGGTCATGTGTTTGTTGATGCTGAGCACCTCTTAGTCAGTGTACAAAAGCTTCTTGAGGAAAATAA
ACGGAATCAAATTGAATTTGCCGATATAACCCGTGAACTATTGAAGCTAGAAGAAGAAGGAAAAATTATCGTCGAAAACA
AAAGATTTTACTTGCCTTCCCTTTATTTTTCTGAAAAAGGACTTGTTACAAGTATTAAGAAGCTGCTCGAGCAAACGGAG
TATGCTGATCAATTTCCTGAATCAGAGTTCTTGCTGGCACTTGGCAATTTAGAAGAACGAATTGGTGTACAGTACGCACC
GACGCAAAAAGATGCGATTCAAACTGCTCTGATGTCTCCGTTGTTATTATTAACGGGAGGACCCGGGACTGGTAAAACGA
CTGTTATTAAGGGGATTGTGGAATTATACGCTGAGCTTCATGGCTGCTCACTTGATCCAAAGGATTACAAAAAAGAAGAG
CCTTTTCCCTTTCTGCTGGCGGCGCCAACCGGTCGGGCAGCGAAACGGATGACAGAATCGACCGGACTTCCGGCAGTGAC
GATCCATCGATTGCTAGGGTGGAATGGTAGTGAGGGTTTTGATCATCATGAAGACAACCCGTTAGAAGGGAAAATTCTGA
TAGTCGATGAAACGTCAATGGTTGATATATGGCTTGCTAACCGGTTATTTAAAGCATTACCGGAGCATATCCAGGTCATA
CTTGTCGGCGATGAGGACCAGCTTCCTTCTGTCGGTCCGGGACAGGTATTACGGGACCTGCTTCAATCGAATGTGATTCC
AACGATCAGATTAACGGATATTTATCGCCAGGCCGAAGGTTCCTCCATCATTGAGCTGGCTCATGAAATCAAAAAAGGAA
AGCTGCCAAAAGATGTCAGCATGCAACAGGCGGATCGTTCCTTTTTTCGCTGTCATACCGGACAGATTGCTAATGTGATT
GAAAAAGTTGTCTTAAATGCCAAGAAAAAAGGATACACGCCAAGAGATATTCAGGTATTGGCACCGATGTATAAAGGGCC
TGCAGGAATTGACCGCTTGAACGAAATGCTTCAGGAAATTTTAAATGGAAATCCTGATGGTTCTCGCAAAGAACTGGTCT
TTGGAAACACTAAGTATCGGGTCGGGGATAAAGTCCTTCAGCTTGTCAATCAACCCGATAAGCACGTTTTTAACGGTGAT
ATGGGTGAAGTAGTGTCTGTTTTTTATGCAAAAGAAAATACGGAAAAGCAGGATATGGTTGTTGTTTCCTTTGAGGGTGT
TGAAATAACCTACACAAGGCAGGATTTAAATCAAATTACGCTTGCATATTGCTGCTCGGTTCATAAATCACAGGGAAGCG
AGTTCCCAATTGTCATTTTACCAATTGTAAAAAGTTATTATCGTATGCTGCAGCGAAATTTAATCTATACTGCCATTACA
AGGAGCAAACAATTTTTAATCCTCTGCGGTGAAGAAGAAGCGCTGCGCCTTGGGGTTGAGCGGGCTGACGAACAGTCCCG
GCAAACGACATTAGCTGAAAAACTGCAGGAAGAACTGCAAGAACTAAAACCAAAAGCAGGATCCATAGTGGAAGATCTTC
AAACTGAGGAATTAACGTATGAAGAAATGATGATGAATGTTGATCCAATGATCGGAATGGAGAATGTTAACCCTTATCAA
TTTATGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-552)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.558

99.252

0.611