Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDO37_RS15950 Genome accession   NZ_AP025144
Coordinates   3554566..3555084 (-) Length   172 a.a.
NCBI ID   WP_101112486.1    Uniprot ID   -
Organism   Vibrio penaeicida strain IFO 15640T     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549566..3560084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO37_RS15935 - 3550867..3551661 (+) 795 WP_126606896.1 inner membrane protein YpjD -
  LDO37_RS15940 - 3551761..3553026 (+) 1266 WP_101112484.1 HlyC/CorC family transporter -
  LDO37_RS15945 - 3553241..3554476 (+) 1236 WP_126606895.1 YbiU family protein -
  LDO37_RS15950 luxS 3554566..3555084 (-) 519 WP_101112486.1 S-ribosylhomocysteine lyase Regulator
  LDO37_RS15955 - 3555109..3555714 (-) 606 WP_101112487.1 hypothetical protein -
  LDO37_RS15960 gshA 3555720..3557288 (-) 1569 WP_126606894.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18862.66 Da        Isoelectric Point: 4.8281

>NTDB_id=89959 LDO37_RS15950 WP_101112486.1 3554566..3555084(-) (luxS) [Vibrio penaeicida strain IFO 15640T]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRAHLNGSNVEIIDISP
MGCRTGFYMSLIGTPTESQVAEAWLAAMKDVLKVESQNQIPELNEYQCGTADMHSLDEAKAIATAIIDAGIAVNKNDELA
LPESMLKELSIK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=89959 LDO37_RS15950 WP_101112486.1 3554566..3555084(-) (luxS) [Vibrio penaeicida strain IFO 15640T]
ATGCCATTACTAGATAGTTTCACCGTTGATCACACTAAGATGAACGCTCCTGCGGTTCGCGTGGCGAAAACCATGCAGAC
GCCAAAAGGGGACACGATCACTGTGTTTGATTTGCGATTCACCGCGCCTAACAAAGACATCCTTTCAGAAAGAGGCATAC
ATACGTTAGAGCACCTTTATGCGGGTTTCATGCGTGCGCATTTGAATGGTTCTAATGTGGAAATTATCGATATTTCTCCA
ATGGGCTGTCGTACAGGTTTCTACATGAGTCTTATTGGCACGCCAACAGAATCTCAAGTAGCAGAAGCTTGGCTAGCAGC
AATGAAAGATGTGCTGAAGGTAGAGAGTCAAAATCAAATTCCAGAATTGAATGAATATCAGTGTGGGACTGCAGACATGC
ACTCTCTTGATGAAGCAAAAGCGATTGCGACTGCGATTATCGATGCTGGTATTGCTGTAAATAAAAACGATGAACTGGCG
TTGCCAGAGTCAATGTTAAAAGAACTTAGCATCAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment