Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABK15_RS01770 Genome accession   NZ_AP027759
Coordinates   383025..383657 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 2017-02-1CC     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 378025..388657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK15_RS01745 (VEE73_03400) yhfG 378157..378324 (+) 168 WP_000736860.1 YhfG family protein -
  AABK15_RS01750 (VEE73_03410) fic 378314..378916 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  AABK15_RS01755 (VEE73_03420) pabA 378948..379511 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  AABK15_RS01760 (VEE73_03430) argD 379597..380817 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABK15_RS01765 (VEE73_03440) yhfK 380884..382974 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AABK15_RS01770 (VEE73_03450) crp 383025..383657 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABK15_RS01775 (VEE73_03470) yhfA 383959..384363 (+) 405 WP_001148908.1 OsmC family protein -
  AABK15_RS01780 (VEE73_03480) prkB 384418..385287 (-) 870 WP_001274680.1 phosphoribulokinase -
  AABK15_RS01785 (VEE73_03490) yheU 385341..385559 (-) 219 WP_000907085.1 YheU family protein -
  AABK15_RS01790 (VEE73_03500) yheT 385553..386575 (-) 1023 WP_000057356.1 hydrolase -
  AABK15_RS01795 (VEE73_03510) - 386584..386733 (-) 150 Protein_355 hydrolase -
  AABK15_RS01800 (VEE73_03520) yheS 386733..388646 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=89959 AABK15_RS01770 WP_000242755.1 383025..383657(-) (crp) [Escherichia coli strain 2017-02-1CC]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89959 AABK15_RS01770 WP_000242755.1 383025..383657(-) (crp) [Escherichia coli strain 2017-02-1CC]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment