Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R6U77_RS14580 Genome accession   NZ_CP137624
Coordinates   2936315..2938102 (-) Length   595 a.a.
NCBI ID   WP_319836199.1    Uniprot ID   -
Organism   Lysinibacillus louembei strain Ll15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2931315..2943102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U77_RS14555 (R6U77_14555) - 2931912..2932469 (-) 558 WP_319836194.1 TetR/AcrR family transcriptional regulator -
  R6U77_RS14560 (R6U77_14560) - 2932622..2933113 (+) 492 WP_319836195.1 PaaI family thioesterase -
  R6U77_RS14565 (R6U77_14565) - 2933179..2933568 (-) 390 WP_319836196.1 AsnC family transcriptional regulator -
  R6U77_RS14570 (R6U77_14570) - 2933686..2934228 (+) 543 WP_319836197.1 cysteine hydrolase family protein -
  R6U77_RS14575 (R6U77_14575) - 2934282..2936252 (-) 1971 WP_319836198.1 Na+/H+ antiporter -
  R6U77_RS14580 (R6U77_14580) rcrQ 2936315..2938102 (-) 1788 WP_319836199.1 ABC transporter ATP-binding protein Regulator
  R6U77_RS14585 (R6U77_14585) rcrP 2938092..2939846 (-) 1755 WP_319836200.1 ABC transporter ATP-binding protein Regulator
  R6U77_RS14590 (R6U77_14590) - 2940418..2941608 (-) 1191 WP_319836201.1 multidrug effflux MFS transporter -
  R6U77_RS14595 (R6U77_14595) - 2941879..2942394 (-) 516 Protein_2802 GNAT family N-acetyltransferase -
  R6U77_RS14600 (R6U77_14600) - 2942407..2942859 (-) 453 WP_293927314.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 66017.67 Da        Isoelectric Point: 5.3722

>NTDB_id=899457 R6U77_RS14580 WP_319836199.1 2936315..2938102(-) (rcrQ) [Lysinibacillus louembei strain Ll15]
MTNNPQSSEKQQQSFKQAWGKLIAYCKPYLFAIIFALILAIFGTVFTIIGPEKLSDITDLIAEGMMGTMDIEAIGKIGLF
LAVLYGLSFVFTYIQSFIMATITQRISKKLRNDISNKMDKLPLKYFDSTTHGDVLSRVTNDVDTIGQTLNQSIGSLVTAG
VMFFGSLIMMFWINVPLALSAVSATVVGFVLMFLIISKSQKYFIRQQEDLGKINGHIEEMYSGHNVVKVYNGGQEATRTF
DEINERLFTSAWKSQFMSGMMMPLMMFIGNLGYVVVCVVGAALVVKGSITFGVIVSFMVYIRLFTQPLAQLAQAATSLQA
TAAASKRVFEFLEEDELEDERHKTEVLVAKNVEGHVAFKNVQFGYMEDHLVIKDFSMNIQAGQKVAIVGPTGAGKTTLVN
LLMRFYEVNRGEITIDGVPIQSITRENVHELFCMVLQDTWLFEGTIKENIIYNKADVTDEEVEAACKAVGLNHFIKTLPE
GYNTLLNDKASLSVGQKQLLTIARAIVKKAPLLILDEATSSVDTRTEVLIQEAMDKLMVGKTSFVIAHRLSTIKNADVIL
VMKDGDVIESGSHEQLIAQQGFYADLYNSQFEDAS

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=899457 R6U77_RS14580 WP_319836199.1 2936315..2938102(-) (rcrQ) [Lysinibacillus louembei strain Ll15]
ATGACAAATAACCCTCAAAGTTCTGAAAAGCAACAACAAAGCTTTAAGCAAGCATGGGGCAAGCTCATTGCTTATTGTAA
GCCTTATTTATTTGCTATTATTTTTGCGCTAATTCTAGCAATCTTCGGCACGGTTTTCACGATTATTGGTCCTGAGAAGC
TAAGCGATATTACGGATTTAATCGCAGAGGGCATGATGGGCACAATGGATATCGAGGCGATTGGCAAAATCGGTCTGTTT
CTAGCGGTGCTTTACGGTTTAAGCTTTGTCTTCACATATATCCAATCCTTTATTATGGCGACGATTACACAGCGGATTTC
GAAAAAGCTGCGCAACGATATTTCAAATAAAATGGATAAATTGCCGTTGAAATATTTTGATTCAACGACACATGGAGATG
TTTTAAGCCGTGTGACAAATGATGTTGATACGATTGGGCAAACATTGAACCAAAGCATCGGCTCATTAGTAACAGCTGGT
GTCATGTTTTTTGGCTCGCTCATTATGATGTTTTGGATTAATGTGCCACTGGCATTATCAGCAGTTTCCGCAACAGTTGT
CGGCTTTGTGCTGATGTTTCTTATTATTTCAAAATCGCAAAAATACTTTATTCGACAGCAGGAAGACTTAGGGAAAATTA
ACGGCCATATTGAAGAAATGTACTCTGGGCATAATGTTGTCAAAGTATATAACGGTGGACAAGAGGCAACACGTACATTT
GATGAAATTAATGAACGTCTCTTTACGAGTGCATGGAAGTCACAATTTATGTCGGGTATGATGATGCCCTTAATGATGTT
TATTGGTAATTTAGGCTATGTTGTTGTCTGCGTTGTAGGGGCAGCACTCGTTGTTAAAGGCTCCATTACCTTCGGGGTGA
TTGTTTCCTTTATGGTCTATATTCGCTTATTTACACAGCCTTTAGCACAATTGGCACAAGCAGCAACAAGCTTACAGGCA
ACAGCTGCGGCAAGCAAACGCGTTTTTGAATTTTTAGAGGAAGACGAGTTAGAGGATGAGCGTCATAAAACTGAGGTCTT
AGTGGCGAAAAATGTCGAGGGACATGTAGCGTTCAAAAATGTGCAGTTTGGCTATATGGAAGACCATCTTGTTATCAAGG
ATTTTTCAATGAATATTCAGGCAGGGCAAAAGGTAGCCATTGTCGGTCCAACAGGTGCTGGGAAAACAACGCTTGTCAAT
TTGCTAATGCGCTTTTATGAAGTAAATCGTGGGGAAATTACCATTGATGGTGTGCCAATCCAATCAATTACGCGTGAAAA
CGTCCACGAGCTATTTTGTATGGTGCTACAGGATACATGGCTATTCGAAGGAACGATTAAGGAAAATATTATTTATAACA
AAGCCGATGTGACAGATGAAGAGGTTGAAGCTGCTTGTAAGGCAGTTGGCTTAAATCACTTTATTAAAACATTGCCAGAG
GGCTATAACACGCTATTAAATGATAAAGCAAGCCTTTCTGTTGGACAAAAGCAGCTTTTAACGATTGCTCGAGCGATTGT
GAAAAAAGCACCTTTGCTTATTCTGGATGAAGCAACGAGCTCTGTTGATACGCGAACAGAGGTGTTAATTCAAGAGGCGA
TGGACAAGCTGATGGTAGGCAAAACATCGTTTGTTATTGCACACCGACTATCAACGATTAAAAATGCGGATGTAATTTTA
GTGATGAAAGATGGCGATGTGATCGAAAGTGGCAGCCACGAGCAGCTCATTGCCCAGCAAGGCTTTTATGCGGATTTATA
TAATAGCCAATTTGAGGATGCTTCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(373-520)

ABC transporter transmembrane region (ABC_membrane)

(33-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.478

97.143

0.568