Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R6U80_RS12240 Genome accession   NZ_CP137623
Coordinates   2465351..2465851 (-) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis strain NCK401     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2460351..2470851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS12215 (R6U80_12215) gnd 2461413..2462318 (-) 906 WP_038603774.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  R6U80_RS12220 (R6U80_12220) - 2462683..2463531 (+) 849 WP_012898662.1 MurR/RpiR family transcriptional regulator -
  R6U80_RS12225 (R6U80_12225) - 2463569..2463877 (+) 309 WP_017865196.1 DUF960 domain-containing protein -
  R6U80_RS12230 (R6U80_12230) - 2463959..2464732 (-) 774 WP_003131951.1 metallophosphoesterase -
  R6U80_RS12235 (R6U80_12235) rpsR 2464932..2465177 (-) 246 WP_003131952.1 30S ribosomal protein S18 -
  R6U80_RS12240 (R6U80_12240) ssb 2465351..2465851 (-) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  R6U80_RS12245 (R6U80_12245) rpsF 2465881..2466174 (-) 294 WP_003131954.1 30S ribosomal protein S6 -
  R6U80_RS12250 (R6U80_12250) - 2466366..2467220 (-) 855 WP_012898664.1 undecaprenyl-diphosphate phosphatase -
  R6U80_RS12255 (R6U80_12255) - 2467743..2469209 (+) 1467 WP_017865200.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=899428 R6U80_RS12240 WP_003131953.1 2465351..2465851(-) (ssb) [Lactococcus lactis strain NCK401]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=899428 R6U80_RS12240 WP_003131953.1 2465351..2465851(-) (ssb) [Lactococcus lactis strain NCK401]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373