Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   R6U80_RS12040 Genome accession   NZ_CP137623
Coordinates   2420158..2420649 (-) Length   163 a.a.
NCBI ID   WP_023190262.1    Uniprot ID   A0AAW7J4W6
Organism   Lactococcus lactis strain NCK401     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2415158..2425649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS12040 (R6U80_12040) comX 2420158..2420649 (-) 492 WP_023190262.1 hypothetical protein Regulator
  R6U80_RS12045 (R6U80_12045) ezrA 2420905..2422635 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  R6U80_RS12050 (R6U80_12050) tsf 2422840..2423868 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  R6U80_RS12055 (R6U80_12055) rpsB 2423990..2424757 (-) 768 WP_010906340.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19732.65 Da        Isoelectric Point: 5.8952

>NTDB_id=899426 R6U80_RS12040 WP_023190262.1 2420158..2420649(-) (comX) [Lactococcus lactis strain NCK401]
MTYYLEEEGFEILFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=899426 R6U80_RS12040 WP_023190262.1 2420158..2420649(-) (comX) [Lactococcus lactis strain NCK401]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAATTCTATTTTCAGAAATGAAACCTATAGTCATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGAATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

76.074

100

0.761