Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   R5H38_RS03035 Genome accession   NZ_CP137602
Coordinates   583618..584619 (+) Length   333 a.a.
NCBI ID   WP_217375145.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 578618..589619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS03020 - 579838..580695 (-) 858 WP_277843282.1 DUF975 family protein -
  R5H38_RS03025 tgt 580963..582105 (+) 1143 WP_217374812.1 tRNA guanosine(34) transglycosylase Tgt -
  R5H38_RS03030 - 582327..583412 (-) 1086 WP_217374813.1 M24 family metallopeptidase -
  R5H38_RS03035 ccpA 583618..584619 (+) 1002 WP_217375145.1 catabolite control protein A Regulator
  R5H38_RS03040 - 584736..585779 (+) 1044 WP_217374814.1 glycosyltransferase family 4 protein -
  R5H38_RS03045 - 585800..587113 (+) 1314 WP_318150838.1 glycosyltransferase family 4 protein -
  R5H38_RS03050 - 587128..587502 (+) 375 WP_318150839.1 hypothetical protein -
  R5H38_RS03055 - 587766..588137 (+) 372 Protein_563 MazG-like protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36790.81 Da        Isoelectric Point: 5.5299

>NTDB_id=899226 R5H38_RS03035 WP_217375145.1 583618..584619(+) (ccpA) [Streptococcus parasuis strain 221006]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANVYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAAASSDAVKLLAKNNKKIAFVSGPLVDDINGKIRFSGYKEGLQANGLEFNEGLVFESKYKYEEGYALAERVLNAG
ATAAYVAEDEIAAGLLNGISDRGIKVPEEFEIITSDDSQVTKYTRPNLTSINQPIYDIGAIAMRMLTKIMHKEELDNREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=899226 R5H38_RS03035 WP_217375145.1 583618..584619(+) (ccpA) [Streptococcus parasuis strain 221006]
ATGAATACAGACGATACCGTGACGATTTATGACGTTGCGCGTGAAGCTGGTGTGTCAATGGCTACAGTCAGTCGTGTAGT
CAATGGTAATAAAAATGTCAAAGAAAACACTCGTAAAAAAGTGTTAGAGGTGATTGATCGATTAGATTATCGCCCAAATG
CTGTTGCGCGTGGTTTGGCAAGTAAAAAAACGACAACTGTGGGGGTTGTGATTCCAAATATTGCTAATGTCTATTTTGCA
ACCTTGGCTAAGGGGATTGATGACATTGCTGATATGTATAAGTATAATATCGTATTGGCAAACAGTGATGAAAATGACGA
GAAAGAAATTAATGTTGTCAATACATTGTTTTCTAAGCAAGTCGATGGTATTATCTTCATGGGCTATCATCTGACAGATA
AGATTCGTGCGGAATTTTCGCGTTCACGCACTCCGATTGTATTAGCAGGTACTGTCGATTTGGAACACCAATTGCCAAGT
GTCAATATTGACTACGCAGCTGCAAGTAGTGATGCAGTAAAATTGCTTGCTAAAAATAACAAAAAAATCGCCTTTGTTTC
AGGTCCATTGGTTGATGACATCAATGGGAAAATTCGTTTTTCTGGTTACAAAGAAGGACTCCAAGCGAATGGTTTAGAGT
TTAATGAAGGTCTTGTCTTTGAATCAAAATACAAATATGAAGAAGGCTATGCCTTGGCGGAACGTGTCTTGAATGCGGGA
GCAACTGCAGCATATGTTGCTGAAGATGAAATCGCTGCCGGTTTGTTAAATGGTATTAGTGATCGTGGTATAAAGGTTCC
TGAAGAATTTGAAATCATTACAAGTGATGATTCACAGGTAACAAAATATACTCGTCCAAATCTGACGTCCATCAATCAAC
CGATTTACGATATTGGCGCAATTGCCATGCGTATGTTGACAAAAATTATGCACAAGGAAGAATTGGATAATCGCGAAGTT
ATCTTGAATCATGGTATCAAGGAACGTAAATCTACAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.58

100

0.796
  ccpA Streptococcus pneumoniae D39

78.979

100

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.61

99.399

0.583