Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R5H38_RS01975 Genome accession   NZ_CP137602
Coordinates   376446..376940 (+) Length   164 a.a.
NCBI ID   WP_171989336.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 371446..381940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS01950 - 372262..372861 (+) 600 WP_274504563.1 histidine phosphatase family protein -
  R5H38_RS01955 - 372873..373475 (+) 603 WP_274504564.1 histidine phosphatase family protein -
  R5H38_RS01960 - 373490..374929 (+) 1440 WP_274504565.1 6-phospho-beta-glucosidase -
  R5H38_RS01965 - 375013..376002 (+) 990 WP_274504566.1 lipoate--protein ligase -
  R5H38_RS01970 rpsF 376144..376434 (+) 291 WP_171989335.1 30S ribosomal protein S6 -
  R5H38_RS01975 ssb 376446..376940 (+) 495 WP_171989336.1 single-stranded DNA-binding protein Machinery gene
  R5H38_RS01980 rpsR 376973..377212 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  R5H38_RS01985 - 377568..378224 (-) 657 WP_130554636.1 DUF1129 domain-containing protein -
  R5H38_RS01990 - 378240..379184 (-) 945 WP_277836861.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18129.89 Da        Isoelectric Point: 4.7294

>NTDB_id=899222 R5H38_RS01975 WP_171989336.1 376446..376940(+) (ssb) [Streptococcus parasuis strain 221006]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGANNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=899222 R5H38_RS01975 WP_171989336.1 376446..376940(+) (ssb) [Streptococcus parasuis strain 221006]
ATGATTAATAATGTAGTATTGGTTGGTCGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACCTTGGCGGTTAACCGCAATTTTAAAAATCAAAATGGTGAACGTGAAGCGGACTTTATTAACGTAGTCATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAAAAAGGTGCGCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGATAACCAACAGGGGCAACGTGTCTACGTTACAGAGGTAGTTGCAGAAAGTTTCCAACTATTGGAAAGCCGTAC
TGCCCGTGAAGGCCAAGGGGGCGGTTATTCAGCTGGTAATTCCTTTGCTGGTGGCAATGATTATAACTCGCCTTATCAAG
CGCCTGCGCAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAACAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366