Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   R5H38_RS01555 Genome accession   NZ_CP137602
Coordinates   299013..300305 (+) Length   430 a.a.
NCBI ID   WP_318150755.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 294013..305305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS01530 - 294666..295307 (+) 642 WP_130555387.1 response regulator transcription factor -
  R5H38_RS01535 - 295359..296759 (+) 1401 WP_318150754.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  R5H38_RS01540 - 296761..297138 (+) 378 WP_217374633.1 S1 RNA-binding domain-containing protein -
  R5H38_RS01545 cysK 297292..298218 (-) 927 WP_217374634.1 cysteine synthase A -
  R5H38_RS01550 - 298324..298956 (-) 633 WP_274504533.1 YigZ family protein -
  R5H38_RS01555 comFA/cflA 299013..300305 (+) 1293 WP_318150755.1 DEAD/DEAH box helicase Machinery gene
  R5H38_RS01560 - 300298..300963 (+) 666 WP_274504535.1 ComF family protein -
  R5H38_RS01565 hpf 301040..301579 (+) 540 WP_217374638.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 48599.24 Da        Isoelectric Point: 9.2549

>NTDB_id=899221 R5H38_RS01555 WP_318150755.1 299013..300305(+) (comFA/cflA) [Streptococcus parasuis strain 221006]
MNELENYHGRLFTKYQLTSEERKKAKTISSVVGKNSCFRCGTSFEEENKLPNAAYYCRACLLLGRVRTDEKLYYFPQKDF
SMNACLLWKGALTDWQQRISDGLVANVEKRQATLVHAVTGAGKTEMMYHAVASLINKGGAVCLASPRIDVCIELYKRLQN
DFSVPISLLHGKSDPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPILYRAADNAVKVDGVLVFLTATSTDEL
DKKVKSGKLQKLSLPRRFHGNPLVVPQKVWFSKFDTYLKKNKLVPKLRNAIHKQRETGYPLLIFVPEISKGLKFATIMEQ
IFPEETIGFVSSQTDNRLEIVEGFRNKEITILISTTILERGVTFPGVDVIVVQADHYLYTLSSLVQISGRVGRSMDRPTG
LLLFFHEGSTQSIEKAIAEIKQMNKEAGYV

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=899221 R5H38_RS01555 WP_318150755.1 299013..300305(+) (comFA/cflA) [Streptococcus parasuis strain 221006]
ATGAATGAACTAGAGAATTACCATGGAAGACTTTTTACTAAATACCAATTAACGTCAGAAGAAAGAAAAAAAGCAAAAAC
AATTTCCAGTGTAGTAGGAAAGAATTCTTGTTTCCGATGCGGTACATCGTTTGAGGAAGAAAACAAGCTGCCAAATGCTG
CGTATTATTGTCGGGCTTGTCTCCTTTTGGGGAGAGTTCGAACAGATGAGAAACTCTACTATTTTCCACAGAAAGATTTT
TCAATGAATGCTTGTCTTCTATGGAAGGGGGCGCTGACCGATTGGCAACAACGAATATCAGATGGACTAGTTGCGAATGT
GGAAAAACGACAAGCAACTCTTGTTCATGCTGTAACAGGTGCGGGCAAAACGGAAATGATGTACCATGCTGTTGCATCAC
TAATTAATAAAGGAGGTGCTGTATGTCTAGCCAGTCCAAGAATTGATGTTTGTATTGAACTCTACAAGCGACTACAAAAT
GATTTTTCGGTCCCAATTAGTCTGCTACATGGGAAATCAGACCCATATTTCAGAACGCCACTCGTTGTTGCGACCACTCA
TCAGTTGTTAAAGTTCTACCAGGCATTTGATTTGGTCTTGATCGATGAAGTAGATGCTTTCCCCTATGCAGACAACCCAA
TATTATATCGAGCAGCAGATAATGCAGTTAAAGTAGACGGTGTTTTAGTATTTTTAACAGCAACCTCTACGGATGAATTA
GATAAAAAAGTCAAATCAGGTAAATTGCAAAAACTCAGTCTCCCTAGACGTTTTCATGGAAACCCGCTTGTGGTTCCGCA
AAAGGTCTGGTTTTCCAAATTCGATACATATTTGAAGAAAAATAAATTAGTTCCAAAACTCAGAAACGCCATTCATAAGC
AAAGAGAAACAGGCTATCCATTACTTATTTTTGTACCAGAAATTTCGAAAGGATTGAAATTTGCAACCATAATGGAACAA
ATCTTTCCAGAAGAAACAATTGGTTTTGTATCGAGTCAGACAGACAATCGGCTTGAAATAGTGGAAGGATTTCGCAACAA
AGAAATTACAATTTTAATTTCTACTACAATCTTAGAGCGTGGTGTAACATTCCCAGGAGTAGATGTCATTGTTGTTCAAG
CCGATCACTACTTATACACGTTATCGAGTCTCGTGCAAATTTCAGGTCGGGTCGGAAGAAGTATGGACCGTCCGACGGGC
TTACTTCTGTTTTTTCATGAAGGAAGTACGCAGTCAATTGAAAAGGCAATTGCAGAAATCAAACAAATGAATAAGGAGGC
GGGTTATGTCTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(288-393)

Type III restriction enzyme, res subunit (ResIII)

(92-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis NCTC 12261

64.789

99.07

0.642
  comFA/cflA Streptococcus pneumoniae Rx1

64.789

99.07

0.642
  comFA/cflA Streptococcus pneumoniae D39

64.789

99.07

0.642
  comFA/cflA Streptococcus pneumoniae R6

64.789

99.07

0.642
  comFA/cflA Streptococcus pneumoniae TIGR4

64.789

99.07

0.642
  comFA/cflA Streptococcus mitis SK321

64.554

99.07

0.64
  comFA Lactococcus lactis subsp. cremoris KW2

50.98

94.884

0.484
  comFA Latilactobacillus sakei subsp. sakei 23K

36.597

99.767

0.365
  comFA Bacillus subtilis subsp. subtilis str. 168

38.084

94.651

0.36