Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   R5Y33_RS02600 Genome accession   NZ_CP137531
Coordinates   517303..517902 (+) Length   199 a.a.
NCBI ID   WP_002248501.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM741     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512303..522902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y33_RS02575 - 512610..513197 (-) 588 WP_002213845.1 superoxide dismutase -
  R5Y33_RS02580 dnaB 513359..514765 (+) 1407 WP_002219448.1 replicative DNA helicase -
  R5Y33_RS02585 pilH 515074..515751 (+) 678 WP_101079073.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R5Y33_RS02590 pilV 515775..516389 (+) 615 WP_002248499.1 type IV pilus modification protein PilV Machinery gene
  R5Y33_RS02595 pilJ 516386..517324 (+) 939 WP_101079071.1 PilW family protein Machinery gene
  R5Y33_RS02600 pilK 517303..517902 (+) 600 WP_002248501.1 pilus assembly protein Machinery gene
  R5Y33_RS02605 pilX 517907..518380 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  R5Y33_RS02610 - 520490..520915 (-) 426 Protein_509 AzlC family ABC transporter permease -
  R5Y33_RS02615 dut 521058..521510 (+) 453 WP_002220679.1 dUTP diphosphatase -
  R5Y33_RS02620 dapC 521586..522773 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21935.90 Da        Isoelectric Point: 6.9099

>NTDB_id=898887 R5Y33_RS02600 WP_002248501.1 517303..517902(+) (pilK) [Neisseria meningitidis strain EXNM741]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISTNESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNTNNGNEEAFDNIVVQGKPIVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPHYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=898887 R5Y33_RS02600 WP_002248501.1 517303..517902(+) (pilK) [Neisseria meningitidis strain EXNM741]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCATTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGAGGATCAGTACCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGTGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCATCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATT
CTACCGACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCACACTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.222

100

0.869