Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   R5Y33_RS02585 Genome accession   NZ_CP137531
Coordinates   515074..515751 (+) Length   225 a.a.
NCBI ID   WP_101079073.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM741     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510074..520751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y33_RS02565 - 510995..511327 (+) 333 WP_002213854.1 hypothetical protein -
  R5Y33_RS02570 - 511658..512167 (+) 510 WP_002227434.1 isoprenylcysteine carboxyl methyltransferase family protein -
  R5Y33_RS02575 - 512610..513197 (-) 588 WP_002213845.1 superoxide dismutase -
  R5Y33_RS02580 dnaB 513359..514765 (+) 1407 WP_002219448.1 replicative DNA helicase -
  R5Y33_RS02585 pilH 515074..515751 (+) 678 WP_101079073.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R5Y33_RS02590 pilV 515775..516389 (+) 615 WP_002248499.1 type IV pilus modification protein PilV Machinery gene
  R5Y33_RS02595 pilJ 516386..517324 (+) 939 WP_101079071.1 PilW family protein Machinery gene
  R5Y33_RS02600 pilK 517303..517902 (+) 600 WP_002248501.1 pilus assembly protein Machinery gene
  R5Y33_RS02605 pilX 517907..518380 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25285.88 Da        Isoelectric Point: 9.7524

>NTDB_id=898884 R5Y33_RS02585 WP_101079073.1 515074..515751(+) (pilH) [Neisseria meningitidis strain EXNM741]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSSKKGQGMLAFGDKNGNKEYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=898884 R5Y33_RS02585 WP_101079073.1 515074..515751(+) (pilH) [Neisseria meningitidis strain EXNM741]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCAGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGAATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

83.482

99.556

0.831