Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   R5Y33_RS00490 Genome accession   NZ_CP137531
Coordinates   109319..109864 (-) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis strain EXNM741     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 104319..114864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y33_RS00475 aroB 104382..105461 (-) 1080 WP_002221481.1 3-dehydroquinate synthase -
  R5Y33_RS00480 - 105541..106053 (-) 513 WP_002214526.1 shikimate kinase -
  R5Y33_RS00485 pilQ 107015..109300 (-) 2286 WP_002248535.1 type IV pilus secretin PilQ Machinery gene
  R5Y33_RS00490 pilP 109319..109864 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  R5Y33_RS00495 - 109882..110529 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  R5Y33_RS00500 pilN 110530..111129 (-) 600 WP_002221479.1 PilN domain-containing protein Machinery gene
  R5Y33_RS00505 - 111132..112247 (-) 1116 WP_002214517.1 type IV pilus biogenesis protein PilM -
  R5Y33_RS00510 - 112399..114795 (+) 2397 WP_002221477.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=898874 R5Y33_RS00490 WP_002214522.1 109319..109864(-) (pilP) [Neisseria meningitidis strain EXNM741]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=898874 R5Y33_RS00490 WP_002214522.1 109319..109864(-) (pilP) [Neisseria meningitidis strain EXNM741]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1