Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ABD409_RS02530 Genome accession   NZ_CP155741
Coordinates   471426..472124 (-) Length   232 a.a.
NCBI ID   WP_023612111.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 400/03     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 466426..477124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD409_RS02500 (ABD409_02485) - 466578..466778 (+) 201 WP_011017514.1 hypothetical protein -
  ABD409_RS02505 (ABD409_02490) - 466898..467383 (+) 486 WP_011017515.1 hypothetical protein -
  ABD409_RS02510 (ABD409_02495) - 467380..467796 (+) 417 WP_172450341.1 hypothetical protein -
  ABD409_RS02515 (ABD409_02500) - 468168..469295 (-) 1128 Protein_445 IS3 family transposase -
  ABD409_RS02520 (ABD409_02505) - 469315..469830 (+) 516 WP_145959619.1 helical hairpin domain-containing protein -
  ABD409_RS02525 (ABD409_02510) - 470047..471408 (-) 1362 WP_023612115.1 sensor histidine kinase KdpD -
  ABD409_RS02530 (ABD409_02515) scnR 471426..472124 (-) 699 WP_023612111.1 response regulator transcription factor Regulator
  ABD409_RS02535 (ABD409_02520) - 472322..472477 (+) 156 WP_023612114.1 lacticin 481 family lantibiotic -
  ABD409_RS02540 (ABD409_02525) - 472677..472832 (+) 156 WP_023612118.1 lacticin 481 family lantibiotic -
  ABD409_RS02545 (ABD409_02530) - 472853..475636 (+) 2784 WP_023612119.1 type 2 lanthipeptide synthetase LanM family protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26186.35 Da        Isoelectric Point: 6.1258

>NTDB_id=898715 ABD409_RS02530 WP_023612111.1 471426..472124(-) (scnR) [Streptococcus pyogenes strain 400/03]
MNFESQLLNKRILIVDDDVALSKSIKEVLISRDFKNISCAYSISEGIDIFSVSKIDLIILDVMLPDGEGHLLAKCIRKYS
DVPILFLTAKNNPDDEIRGLESGGDDYVTKPFLPKSLTYRIIALLRRAYKDESELIELTNCTIDLNNASVEKNGQHLSLT
PTEIQILRKLFSNKNYIASTESICDTVWGLESLGYEKSLMVHIRNIREKIEITPSKPNHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=898715 ABD409_RS02530 WP_023612111.1 471426..472124(-) (scnR) [Streptococcus pyogenes strain 400/03]
ATGAATTTTGAGTCTCAATTATTGAATAAACGCATATTGATTGTCGACGATGATGTCGCACTTAGCAAATCAATTAAAGA
GGTACTTATCAGTCGGGATTTCAAGAATATCAGCTGTGCTTATAGTATAAGCGAAGGAATTGATATCTTCTCAGTTTCTA
AAATTGATCTCATTATTTTAGATGTTATGCTACCAGATGGAGAAGGGCACTTACTTGCAAAATGCATTAGGAAATATTCA
GATGTGCCAATTCTCTTTTTAACAGCCAAAAACAATCCTGATGATGAAATTCGAGGACTTGAATCCGGAGGGGATGATTA
TGTTACGAAGCCATTTCTTCCCAAATCTTTAACATATCGTATTATTGCACTGTTGAGAAGGGCTTATAAAGATGAATCGG
AACTAATTGAGCTAACAAATTGTACCATAGACTTAAACAATGCAAGTGTTGAAAAAAATGGTCAACATTTGTCACTCACT
CCAACAGAAATACAAATCCTACGAAAATTATTTTCAAATAAAAATTATATTGCATCAACTGAATCGATTTGTGATACCGT
TTGGGGACTTGAGAGCCTTGGCTACGAAAAATCACTTATGGTACATATTCGTAATATCAGAGAAAAAATCGAGATAACTC
CATCTAAGCCAAATCATCTTATTACTGTAAAAGGGCTTGGTTATAAACTAGTTATATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-121)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

40.948

100

0.409
  vicR Streptococcus mutans UA159

38.528

99.569

0.384
  micA Streptococcus pneumoniae Cp1015

37.826

99.138

0.375