Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ABD406_RS09635 Genome accession   NZ_CP155738
Coordinates   1927047..1927643 (-) Length   198 a.a.
NCBI ID   WP_023612588.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1510/08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922047..1932643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD406_RS09600 (ABD406_09570) - 1922106..1922411 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  ABD406_RS09605 (ABD406_09575) ruvX 1922423..1922842 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  ABD406_RS09610 (ABD406_09580) - 1922839..1923108 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  ABD406_RS09615 (ABD406_09585) spx 1923223..1923621 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  ABD406_RS09620 (ABD406_09590) recA 1923912..1925048 (-) 1137 WP_023612576.1 recombinase RecA Machinery gene
  ABD406_RS09625 (ABD406_09595) cinA 1925137..1926408 (-) 1272 WP_023612554.1 competence/damage-inducible protein A Machinery gene
  ABD406_RS09630 (ABD406_09600) - 1926477..1927037 (-) 561 WP_023611248.1 DNA-3-methyladenine glycosylase I -
  ABD406_RS09635 (ABD406_09605) ruvA 1927047..1927643 (-) 597 WP_023612588.1 Holliday junction branch migration protein RuvA Machinery gene
  ABD406_RS09640 (ABD406_09610) - 1927645..1928865 (-) 1221 WP_002992187.1 MFS transporter -
  ABD406_RS09645 (ABD406_09615) hexB 1928876..1930858 (-) 1983 WP_023612567.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21829.16 Da        Isoelectric Point: 6.2537

>NTDB_id=898474 ABD406_RS09635 WP_023612588.1 1927047..1927643(-) (ruvA) [Streptococcus pyogenes strain 1510/08]
MYDYIKGQLTKLTAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=898474 ABD406_RS09635 WP_023612588.1 1927047..1927643(-) (ruvA) [Streptococcus pyogenes strain 1510/08]
ATGTACGATTATATTAAAGGTCAATTGACCAAACTTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGATGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424