Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R5U36_RS09240 Genome accession   NZ_CP137472
Coordinates   1906517..1907029 (-) Length   170 a.a.
NCBI ID   WP_002299768.1    Uniprot ID   A0A132P5P8
Organism   Enterococcus faecium strain C4-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1901517..1912029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5U36_RS09220 (R5U36_09220) dnaB 1902040..1903407 (-) 1368 WP_002288373.1 replicative DNA helicase -
  R5U36_RS09225 (R5U36_09225) rplI 1903681..1904133 (-) 453 WP_002288372.1 50S ribosomal protein L9 -
  R5U36_RS09230 (R5U36_09230) - 1904139..1906112 (-) 1974 WP_002288371.1 DHH family phosphoesterase -
  R5U36_RS09235 (R5U36_09235) rpsR 1906255..1906491 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  R5U36_RS09240 (R5U36_09240) ssb 1906517..1907029 (-) 513 WP_002299768.1 single-stranded DNA-binding protein Machinery gene
  R5U36_RS09245 (R5U36_09245) rpsF 1907079..1907378 (-) 300 WP_002288366.1 30S ribosomal protein S6 -
  R5U36_RS09250 (R5U36_09250) gyrA 1907614..1910085 (-) 2472 WP_002288365.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18437.96 Da        Isoelectric Point: 4.6742

>NTDB_id=898163 R5U36_RS09240 WP_002299768.1 1906517..1907029(-) (ssb) [Enterococcus faecium strain C4-1]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLVGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=898163 R5U36_RS09240 WP_002299768.1 1906517..1907029(-) (ssb) [Enterococcus faecium strain C4-1]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTGTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A132P5P8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.887

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

62.353

0.394