Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   M2Z51_RS05200 Genome accession   NZ_AP024967
Coordinates   1124386..1126554 (+) Length   722 a.a.
NCBI ID   WP_172779501.1    Uniprot ID   -
Organism   Vibrio cholerae strain V130003     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1119386..1131554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS05175 (V130003_10140) - 1119774..1120349 (-) 576 WP_000999601.1 PilZ domain-containing protein -
  M2Z51_RS05180 (V130003_10150) lolC 1120525..1121733 (+) 1209 WP_032476337.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  M2Z51_RS05185 (V130003_10160) lolD 1121726..1122412 (+) 687 WP_032476336.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  M2Z51_RS05190 (V130003_10170) lolE 1122413..1123657 (+) 1245 WP_000493013.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  M2Z51_RS05195 (V130003_10180) - 1123772..1124302 (-) 531 WP_001881633.1 DUF2062 domain-containing protein -
  M2Z51_RS05200 (V130003_10190) comEC 1124386..1126554 (+) 2169 WP_172779501.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M2Z51_RS05205 (V130003_10200) msbA 1126585..1128333 (+) 1749 WP_000052155.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  M2Z51_RS05210 (V130003_10210) lpxK 1128336..1129343 (+) 1008 WP_032476388.1 tetraacyldisaccharide 4'-kinase -
  M2Z51_RS05215 (V130003_10220) - 1129324..1129503 (+) 180 WP_000350068.1 Trm112 family protein -
  M2Z51_RS05220 (V130003_10230) kdsB 1129503..1130276 (+) 774 WP_032476335.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M2Z51_RS05225 (V130003_10240) tnpA 1130448..1130885 (+) 438 WP_000503164.1 IS200/IS605-like element IS1004 family transposase -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 81548.26 Da        Isoelectric Point: 7.9738

>NTDB_id=89793 M2Z51_RS05200 WP_172779501.1 1124386..1126554(+) (comEC) [Vibrio cholerae strain V130003]
MPSWGWAWLCLIVMVLLGYHRVGRQFLGFVAAILTIVLQGNLIRDQSNVLYQAGPDIIIKGRVDSFFTQTRYAYEGFVLI
HEVNGQTLNKMTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYMAQSVVARAVVKPDTAYQIVQESGIR
SSLFFELEQLTHTSSYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAISGLHIGIAFSVGYFLGLGMMRLHAQLLWSP
FVCGALLAVLYAWLAGFTLPTQRALIMCLLNVALLMLAFPLSALKRILLTLVAVLLWSPFASLSNSFWMSFLAVAIVLYQ
LASQSQRQVWWKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWPSMAAAYWPWV
DWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMNLKACSLLLGMIGLWWWFPSLTPLWRMDVLDVGHGLAI
VIEQDERAIVYDTGSSWPGGSYVQSVIEPILQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPNWIRASQLGTEFMPCI
RGESWQWQSLHFTVLWPPQAVSRAYNQHSCVIRMTDTQSKHSVLLSGDVTAMGEWLLARDGAQLQSEVMIVPHHGSKTSS
TAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQISLFFYPDQLDWFTQRSLGWQPWYRQMLRKG
VE

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=89793 M2Z51_RS05200 WP_172779501.1 1124386..1126554(+) (comEC) [Vibrio cholerae strain V130003]
ATGCCGAGTTGGGGTTGGGCTTGGTTATGCCTTATTGTTATGGTTTTGCTCGGTTATCACCGAGTTGGCCGTCAATTCCT
TGGCTTCGTGGCTGCCATACTAACCATTGTGCTACAGGGCAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAG
GGCCGGATATTATCATAAAAGGCCGTGTTGACAGCTTTTTTACGCAAACTCGTTACGCTTATGAGGGTTTTGTCCTCATT
CATGAAGTGAATGGACAAACCTTAAACAAAATGACTCGCCCTCGCATACGTTTAAGTGCCCCTTTACTGTTACAACCCAA
TGACCGCGTCGAATTTTCGGTAACTCTCAAGCCGATAGTGGGTCGACTCAACCAAACCGGCTTTGATTTAGAAGCGCATT
ACATGGCGCAATCTGTCGTCGCACGAGCGGTCGTAAAACCTGACACTGCTTATCAAATTGTGCAAGAGAGTGGCATAAGG
TCAAGTTTGTTTTTTGAGCTAGAGCAATTAACGCATACCAGCTCATACCAAGGATTGATCTTAGCCCTGACGTTTGGCGA
GCGAAAAGGTATTGATGAGCAAGAGTGGCAAGCCTTACGCAATAGTGGCTTAATTCATTTAGTGGCGATTTCGGGGCTGC
ACATTGGTATCGCTTTTAGCGTGGGGTATTTTCTCGGGCTCGGCATGATGCGTCTTCATGCTCAGTTATTGTGGTCCCCT
TTTGTGTGTGGGGCTTTACTGGCGGTGCTCTATGCTTGGCTGGCCGGATTTACGTTGCCTACTCAGCGTGCATTGATTAT
GTGCTTACTCAATGTGGCGTTGCTCATGTTGGCTTTTCCTCTTTCCGCGCTCAAGCGGATTCTACTCACCTTAGTCGCGG
TCTTGCTTTGGTCGCCATTCGCCTCACTTTCAAACAGTTTCTGGATGTCGTTTTTGGCGGTTGCGATTGTTCTCTACCAA
TTAGCCAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCTCTGCTTTGGGCGCAGGTGTTCCTCGTCTGTTTAATGGCGCC
GGTCACGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGCAGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGG
TGATTGTCCCAGCTTTGTTTTTGGGTCTATTACTCATGGTGGTATGGCCTAGTATGGCCGCCGCTTACTGGCCTTGGGTG
GATTGGACGTTTTTACCGCTCGATTGGGCTTTGCAGTTTGCCGATGTAGGCTGGTGGGTGGTCCCCAGCAAAGTACAAGG
TGTGGTCGCAGCGAGTGTGGCCATCCTCTTACTTTATCGATTTATGAACTTAAAAGCCTGCAGCTTATTATTGGGTATGA
TTGGCTTATGGTGGTGGTTTCCCTCTCTCACTCCACTTTGGCGAATGGATGTGCTGGATGTTGGACATGGCTTGGCGATT
GTGATTGAGCAAGATGAGCGAGCAATTGTCTACGATACAGGCAGCAGTTGGCCGGGAGGCAGCTATGTGCAAAGCGTGAT
TGAGCCTATTCTCCAACAGCGAGGGCTACGCCAAGTCGATGGAGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTG
ATTGGCAAGGTTTAGCTGAGCGCTGGCAACCTAATTGGATTCGTGCCAGCCAACTCGGGACAGAGTTTATGCCTTGTATC
CGTGGTGAAAGCTGGCAGTGGCAATCTCTCCATTTTACGGTGTTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCA
GCATTCGTGTGTGATTCGTATGACCGATACTCAGTCTAAGCATTCTGTACTGCTCTCCGGGGATGTCACAGCCATGGGGG
AGTGGCTGCTTGCTCGCGACGGAGCGCAACTGCAAAGTGAGGTGATGATCGTGCCGCATCACGGCAGTAAAACGTCGTCC
ACCGCAGAGTTTATTGCCCAAGTGAATCCCAAACTTGCGATTGCTTCTGTGGCGAAAGATAACCGCTGGAATTTGCCTAA
TCCGCAAGTCGTGGCACGTTATCAAGCTCAGCAAGTTGAGTGGCTAGATACTGGACACGCTGGGCAAATTAGCCTCTTTT
TCTATCCAGATCAGCTGGATTGGTTTACCCAGCGTAGCCTTGGCTGGCAGCCTTGGTATAGGCAGATGCTGCGTAAAGGA
GTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(7-148)

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-654)

Competence protein (Competence)

(183-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

98.892

100

0.989
  comEC Vibrio parahaemolyticus RIMD 2210633

41.257

100

0.418
  comEC Vibrio campbellii strain DS40M4

41.265

100

0.416

Multiple sequence alignment