Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   ABDZ21_RS15055 Genome accession   NZ_CP155721
Coordinates   3096048..3098480 (-) Length   810 a.a.
NCBI ID   WP_024432326.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2024CK-00246     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3091048..3103480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ21_RS15030 (ABDZ21_15030) purM 3091371..3092441 (+) 1071 WP_000071984.1 phosphoribosylformylglycinamidine cyclo-ligase -
  ABDZ21_RS15035 (ABDZ21_15035) purN 3092438..3093067 (+) 630 WP_000975531.1 phosphoribosylglycinamide formyltransferase -
  ABDZ21_RS15040 (ABDZ21_15040) - 3093131..3093940 (-) 810 WP_000114071.1 alpha/beta hydrolase -
  ABDZ21_RS15045 (ABDZ21_15045) sppA 3093959..3094975 (-) 1017 WP_001286615.1 signal peptide peptidase SppA -
  ABDZ21_RS15050 (ABDZ21_15050) - 3095112..3096095 (+) 984 WP_001984639.1 lysophospholipid acyltransferase family protein -
  ABDZ21_RS15055 (ABDZ21_15055) comA/comEC 3096048..3098480 (-) 2433 WP_024432326.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABDZ21_RS15060 (ABDZ21_15060) lolD 3098566..3099252 (-) 687 WP_000049406.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ABDZ21_RS15065 (ABDZ21_15065) - 3099245..3100480 (-) 1236 WP_001984636.1 lipoprotein-releasing ABC transporter permease subunit -
  ABDZ21_RS15070 (ABDZ21_15070) - 3100500..3100698 (+) 199 Protein_2957 hypothetical protein -
  ABDZ21_RS15075 (ABDZ21_15075) - 3100728..3101636 (-) 909 WP_001140072.1 EamA family transporter -
  ABDZ21_RS15080 (ABDZ21_15080) - 3101647..3102132 (-) 486 WP_001985538.1 YaiI/YqxD family protein -
  ABDZ21_RS15085 (ABDZ21_15085) - 3102389..3103330 (+) 942 WP_000795878.1 hypothetical protein -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 92306.59 Da        Isoelectric Point: 8.5829

>NTDB_id=897779 ABDZ21_RS15055 WP_024432326.1 3096048..3098480(-) (comA/comEC) [Acinetobacter baumannii strain 2024CK-00246]
MFKIILLGWIGGIALMGIDFPLIMQYEKVGEALLLLAFIFYLYKRPMFVDRPFLKAVFCLLCTTSLFMVGYHYAEKALIE
RLEQRETDTRNLDIIVYINHLSEEKDNKVQQTAQVLNLSKEPVNWLLYLKSNNQNLLKNNQNLELGHYYRISGKTRPAHS
YATPGAFDQEKWFIQRNIMSGFNVRYIEPLSLDEIYRLGYQQHLKEQQSFSSSFRLNIEKLRLTFRQILNSSSLQQKGLI
LALLTGDESLLSDETQLQFKQLGISHLLAISGPHVLIFAIMLSWACHQFISRYYPQIYLWKPKQVLMAVPCCLGVLIYTA
FVGFEIPALRTLLSTLIFIGFLLLKQPIKPFTLLVYSASLLLLIDPFSVLSAGFWLSYGACFILLRIYQTIAQLPEQHFL
SLGSKMIFMSKVLIESQGKIFIALSPLTLLFFQQISWVAPLTNIIAVPIVGGVIVPLNIIAACAWFVVKPFGNMLFHFND
MLLSILLSCLGLLEKLSLPLQGISLTPLSLLAISCAIIILFLPKGILPKTWGILCCLPLVMMNKTSQQIQLNILDVGQGQ
AIFLQHPQQNWLIDTGGSYDEKIFSIGQNVVVPFLRQQGVRQLDHVVLSHLDQDHSGAFPIIQQEIPVKQLISNEQLPND
LKQPFQYCHQGQQWHYSELDIQILWPKEKDLAFVASNQNQYSCVVYLQFKKVGGYQNFLIMGDAGWEAEYELLKDYPNLK
IDVLVLGHHGSKHSSAYDFLATLKPKLAIASAGFDNRYGHPSQQVIARLKALHIPLKSTLEQGTLSFVLENHKLVLHDRR
LDRLWLSRGF

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=897779 ABDZ21_RS15055 WP_024432326.1 3096048..3098480(-) (comA/comEC) [Acinetobacter baumannii strain 2024CK-00246]
ATGTTTAAGATTATTCTATTGGGGTGGATTGGCGGTATTGCATTGATGGGAATAGATTTCCCTTTAATCATGCAATATGA
AAAAGTGGGCGAGGCTCTACTGTTACTTGCCTTTATTTTTTATCTTTATAAACGCCCCATGTTCGTTGATCGACCATTTT
TAAAGGCAGTGTTTTGCTTATTATGTACAACAAGTCTTTTTATGGTTGGTTACCACTATGCTGAAAAAGCATTGATTGAA
CGATTAGAACAAAGAGAAACGGATACCCGAAATCTCGACATTATTGTTTATATAAACCATTTAAGTGAAGAAAAAGATAA
TAAGGTTCAACAAACTGCACAAGTTCTAAATCTTTCTAAAGAACCGGTGAATTGGTTGCTATATTTAAAAAGTAATAATC
AAAATTTATTAAAGAATAATCAGAATCTTGAATTAGGCCACTATTATCGAATATCTGGAAAAACAAGACCTGCGCATAGT
TATGCCACCCCAGGAGCTTTTGATCAGGAAAAGTGGTTTATTCAGCGAAATATTATGTCTGGTTTTAACGTGAGATATAT
TGAGCCTTTAAGTCTCGATGAAATCTATCGATTGGGCTATCAGCAACATTTAAAAGAACAACAGTCTTTTTCCAGTAGTT
TTCGTTTAAATATAGAAAAACTTCGCTTAACTTTTAGGCAAATATTAAACAGCTCATCTTTACAGCAAAAGGGTTTAATT
TTAGCTTTGCTGACAGGTGATGAAAGCCTTTTATCAGATGAAACTCAACTACAGTTCAAACAATTAGGAATTAGTCATTT
ATTGGCGATCTCAGGCCCACATGTGCTCATTTTTGCCATTATGTTATCTTGGGCATGTCATCAATTTATCAGTCGTTATT
ATCCTCAAATTTACTTATGGAAACCGAAACAGGTTTTGATGGCTGTACCATGCTGCCTTGGTGTTTTAATTTATACTGCA
TTTGTAGGTTTCGAAATTCCTGCACTACGAACATTATTATCAACCCTTATATTTATTGGATTTCTATTATTAAAACAACC
TATTAAACCTTTTACATTACTCGTATATAGCGCAAGTCTACTGTTGCTAATTGACCCGTTTAGTGTGCTTTCTGCAGGTT
TTTGGCTGTCTTATGGGGCATGCTTTATTTTATTAAGAATTTACCAAACTATAGCGCAGCTACCTGAGCAACATTTTTTA
AGTCTGGGCTCAAAAATGATTTTTATGAGTAAGGTGTTAATTGAATCTCAAGGCAAAATATTTATTGCATTGAGTCCCTT
AACCTTACTTTTCTTTCAACAAATTTCTTGGGTTGCTCCATTAACCAATATTATTGCCGTGCCTATTGTTGGTGGTGTTA
TTGTCCCTTTAAACATCATAGCTGCTTGCGCATGGTTTGTAGTAAAACCATTTGGAAATATGCTTTTTCATTTCAATGAT
ATGTTGCTCAGCATATTGCTGAGTTGTTTGGGCTTATTAGAAAAACTCTCTTTACCATTACAAGGTATAAGCTTGACGCC
ACTGTCTTTATTAGCGATTAGTTGTGCCATAATTATTTTATTTTTACCTAAAGGAATTCTGCCCAAAACTTGGGGAATAT
TATGTTGTTTACCCCTAGTTATGATGAACAAAACGAGTCAGCAAATTCAGCTTAATATTTTAGATGTTGGCCAGGGGCAG
GCTATTTTTCTACAACATCCCCAACAAAACTGGTTAATTGATACAGGCGGTTCTTACGATGAAAAAATATTTAGTATTGG
ACAAAATGTTGTAGTGCCTTTTCTACGTCAGCAAGGCGTAAGACAATTAGATCATGTTGTGCTATCCCATCTTGATCAAG
ACCATAGTGGCGCGTTTCCTATTATTCAACAAGAGATTCCTGTAAAGCAGCTTATTTCGAATGAACAATTACCAAATGAT
TTAAAGCAACCATTCCAATATTGCCATCAAGGGCAACAATGGCATTATTCTGAGTTAGATATTCAAATTTTATGGCCTAA
AGAAAAAGATCTGGCTTTTGTTGCTTCTAATCAGAATCAATATTCTTGTGTTGTATATCTTCAATTTAAAAAAGTTGGTG
GTTACCAAAATTTTCTTATTATGGGCGATGCTGGATGGGAAGCTGAATACGAGTTATTAAAAGATTATCCTAACTTGAAG
ATAGATGTGTTAGTGCTAGGGCATCATGGAAGTAAGCATAGTTCGGCTTATGATTTCTTGGCGACCTTAAAACCTAAACT
GGCCATTGCATCGGCAGGGTTTGATAACCGTTATGGCCATCCTAGCCAACAAGTTATAGCACGTTTAAAAGCTCTGCATA
TTCCGCTAAAAAGTACTTTGGAACAAGGGACCTTAAGTTTTGTGCTGGAAAACCACAAATTAGTTTTACATGACCGACGT
TTGGATCGGCTCTGGCTGAGTAGAGGTTTTTAA

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(33-188)

Competence protein (Competence)

(243-521)

Metallo-beta-lactamase superfamily (Lactamase_B)

(555-638)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii strain A118

98.765

100

0.988
  comA/comEC Acinetobacter baumannii D1279779

97.654

100

0.977
  comEC Acinetobacter nosocomialis M2

84.777

99.753

0.846
  comA/comEC Acinetobacter baylyi ADP1

50.062

100

0.501