Detailed information NTG0089747

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: OHP008_RS00740
• Genome accession: NZ_AP024965
• Coordinates: 170602..171732 (-)
• Length: 376 a.a.
• NCBI ID: WP_223888427.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain #8
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 165602..176732

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHP008_RS00725 (OHP008_01470)	-	167022..167954 (-)	933	WP_212894967.1	GDP-L-fucose synthase	-
OHP008_RS00730 (OHP008_01480)	gmd	167947..169092 (-)	1146	WP_223888425.1	GDP-mannose 4,6-dehydratase	-
OHP008_RS00735 (OHP008_01490)	-	169120..170532 (-)	1413	WP_223888426.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
OHP008_RS00740 (OHP008_01500)	comB10	170602..171732 (-)	1131	WP_223888427.1	DNA type IV secretion system protein ComB10	Machinery gene
OHP008_RS00745 (OHP008_01510)	comB9	171725..172687 (-)	963	WP_223888428.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
OHP008_RS00750 (OHP008_01520)	comB8	172687..173430 (-)	744	WP_000660524.1	virB8 family protein	Machinery gene
OHP008_RS00755	comB7	173427..173540 (-)	114	WP_001217868.1	hypothetical protein	Machinery gene
OHP008_RS00760 (OHP008_01530)	comB6	173556..174611 (-)	1056	WP_223888429.1	P-type conjugative transfer protein TrbL	Machinery gene
OHP008_RS00765 (OHP008_01540)	-	174617..175612 (-)	996	WP_223888752.1	PDZ domain-containing protein	-
OHP008_RS00770 (OHP008_01550)	-	175612..175905 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
OHP008_RS00775 (OHP008_01560)	panD	175908..176261 (-)	354	WP_000142245.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41974.64 Da
• Isoelectric Point: 9.9637

>NTDB_id=89747 OHP008_RS00740 WP_223888427.1 170602..171732(-) (comB10) [Helicobacter pylori strain #8]
MNKWLKGVLVFVGGFATIVTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=89747 OHP008_RS00740 WP_223888427.1 170602..171732(-) (comB10) [Helicobacter pylori strain #8]
ATGAATAAGTGGCTTAAGGGGGTGCTTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGAAAAGCTGTTTTAATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	98.404	100	0.984