Detailed information NTG0089751

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: OHP008_RS00760
• Genome accession: NZ_AP024965
• Coordinates: 173556..174611 (-)
• Length: 351 a.a.
• NCBI ID: WP_223888429.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain #8
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 168556..179611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHP008_RS00735 (OHP008_01490)	-	169120..170532 (-)	1413	WP_223888426.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
OHP008_RS00740 (OHP008_01500)	comB10	170602..171732 (-)	1131	WP_223888427.1	DNA type IV secretion system protein ComB10	Machinery gene
OHP008_RS00745 (OHP008_01510)	comB9	171725..172687 (-)	963	WP_223888428.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
OHP008_RS00750 (OHP008_01520)	comB8	172687..173430 (-)	744	WP_000660524.1	virB8 family protein	Machinery gene
OHP008_RS00755	comB7	173427..173540 (-)	114	WP_001217868.1	hypothetical protein	Machinery gene
OHP008_RS00760 (OHP008_01530)	comB6	173556..174611 (-)	1056	WP_223888429.1	P-type conjugative transfer protein TrbL	Machinery gene
OHP008_RS00765 (OHP008_01540)	-	174617..175612 (-)	996	WP_223888752.1	PDZ domain-containing protein	-
OHP008_RS00770 (OHP008_01550)	-	175612..175905 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
OHP008_RS00775 (OHP008_01560)	panD	175908..176261 (-)	354	WP_000142245.1	aspartate 1-decarboxylase	-
OHP008_RS00780 (OHP008_01570)	-	176251..178473 (-)	2223	WP_223888430.1	ATP-dependent Clp protease ATP-binding subunit	-
OHP008_RS00785 (OHP008_01580)	-	178473..178748 (-)	276	WP_223888431.1	ATP-dependent Clp protease adaptor ClpS	-
OHP008_RS00790 (OHP008_01590)	-	178756..179169 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39859.84 Da
• Isoelectric Point: 8.8165

>NTDB_id=89751 OHP008_RS00760 WP_223888429.1 173556..174611(-) (comB6) [Helicobacter pylori strain #8]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLLLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=89751 OHP008_RS00760 WP_223888429.1 173556..174611(-) (comB6) [Helicobacter pylori strain #8]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCACGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGTGCTTTCTTTAGATTTTATTTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGCGTGCTGCTTTTAGCGTTTGGTTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAATGCCCTTAATTCCTTACAATATATCA
CAACCCCACCCGCTTCCTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963