Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   OHP008_RS00750 Genome accession   NZ_AP024965
Coordinates   172687..173430 (-) Length   247 a.a.
NCBI ID   WP_000660524.1    Uniprot ID   A0AAI8F143
Organism   Helicobacter pylori strain #8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 167687..178430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP008_RS00730 (OHP008_01480) gmd 167947..169092 (-) 1146 WP_223888425.1 GDP-mannose 4,6-dehydratase -
  OHP008_RS00735 (OHP008_01490) - 169120..170532 (-) 1413 WP_223888426.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  OHP008_RS00740 (OHP008_01500) comB10 170602..171732 (-) 1131 WP_223888427.1 DNA type IV secretion system protein ComB10 Machinery gene
  OHP008_RS00745 (OHP008_01510) comB9 171725..172687 (-) 963 WP_223888428.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  OHP008_RS00750 (OHP008_01520) comB8 172687..173430 (-) 744 WP_000660524.1 virB8 family protein Machinery gene
  OHP008_RS00755 comB7 173427..173540 (-) 114 WP_001217868.1 hypothetical protein Machinery gene
  OHP008_RS00760 (OHP008_01530) comB6 173556..174611 (-) 1056 WP_223888429.1 P-type conjugative transfer protein TrbL Machinery gene
  OHP008_RS00765 (OHP008_01540) - 174617..175612 (-) 996 WP_223888752.1 PDZ domain-containing protein -
  OHP008_RS00770 (OHP008_01550) - 175612..175905 (-) 294 WP_000347916.1 YbaB/EbfC family nucleoid-associated protein -
  OHP008_RS00775 (OHP008_01560) panD 175908..176261 (-) 354 WP_000142245.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28684.91 Da        Isoelectric Point: 8.9546

>NTDB_id=89749 OHP008_RS00750 WP_000660524.1 172687..173430(-) (comB8) [Helicobacter pylori strain #8]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=89749 OHP008_RS00750 WP_000660524.1 172687..173430(-) (comB8) [Helicobacter pylori strain #8]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGAAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTGTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATTAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment