Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   ABC804_RS03235 Genome accession   NZ_CP155536
Coordinates   577524..579539 (+) Length   671 a.a.
NCBI ID   WP_001048762.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M264-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 572524..584539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC804_RS03215 (ABC804_03215) - 573941..574972 (+) 1032 WP_000232209.1 3-deoxy-7-phosphoheptulonate synthase -
  ABC804_RS03220 (ABC804_03220) - 574974..576005 (+) 1032 WP_000864061.1 3-deoxy-7-phosphoheptulonate synthase -
  ABC804_RS03225 (ABC804_03225) acpS 576050..576412 (+) 363 WP_000635008.1 holo-ACP synthase -
  ABC804_RS03230 (ABC804_03230) alr 576402..577505 (+) 1104 WP_000648104.1 alanine racemase -
  ABC804_RS03235 (ABC804_03235) recG/mmsA 577524..579539 (+) 2016 WP_001048762.1 ATP-dependent DNA helicase RecG Machinery gene
  ABC804_RS03240 (ABC804_03240) - 579855..580835 (+) 981 WP_000795123.1 acetylxylan esterase -
  ABC804_RS03245 (ABC804_03245) - 581189..581329 (-) 141 WP_001808987.1 hypothetical protein -
  ABC804_RS03250 (ABC804_03250) - 581730..581957 (+) 228 WP_000576349.1 hypothetical protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75305.87 Da        Isoelectric Point: 5.9460

>NTDB_id=897170 ABC804_RS03235 WP_001048762.1 577524..579539(+) (recG/mmsA) [Streptococcus pneumoniae strain M264-3]
MNLHQPLHVLPGVGPKSAEKYAKLGIENLQDLLLYFPFRYEDFKTKQVLELEDGEKAVLSGQVVTPASVQYYGFKRNRLR
FSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGKWDRAKASLTGMKVLAQVEDDLQPVYRLAQGISQASLVKVIKTAFD
QGLDLLIEENLPQSLLDKYKLMSRCQAVRAMHFPKDLAEYKQALRRIKFEELFYFQMQLQTLKSENRVQGSGLVLDWSQE
KVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFES
LQNLFPNLKLALLTGSLKAAEKREVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQVYVISPLIEESEALDLKN
AIALSEELTTHFAGKTEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTDSGKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARK
VASYISSIEAWQEDPEWRMIALHLEKKEHLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=897170 ABC804_RS03235 WP_001048762.1 577524..579539(+) (recG/mmsA) [Streptococcus pneumoniae strain M264-3]
ATGAATCTACATCAACCCTTGCATGTCTTGCCTGGTGTGGGACCAAAGTCAGCAGAAAAATACGCCAAACTAGGAATTGA
AAACTTGCAAGATCTCTTGCTCTACTTTCCTTTCCGTTATGAAGACTTCAAAACCAAGCAGGTGCTGGAACTAGAAGACG
GTGAGAAGGCAGTTCTTTCTGGTCAGGTAGTGACTCCTGCTAGTGTCCAGTATTATGGTTTCAAGCGCAATCGCCTGCGT
TTTAGTCTCAAGCAGGGAGAGGTCGTTTTTGCGGTGAATTTCTTTAACCAGCCCTATCTGGCTGATAAAATAGAGTTGGG
AGCAACCCTTGCTGTCTTTGGAAAATGGGACCGCGCTAAGGCTAGTCTGACTGGGATGAAGGTTCTGGCTCAGGTAGAAG
ATGACCTCCAGCCTGTCTATCGTCTGGCTCAGGGAATCAGTCAGGCCAGTCTGGTCAAGGTCATCAAGACGGCTTTTGAT
CAGGGACTGGACCTCTTGATAGAAGAAAATCTGCCCCAGTCTTTACTAGACAAATACAAACTCATGTCCCGTTGTCAGGC
AGTCCGAGCTATGCATTTTCCAAAGGATTTGGCAGAATACAAGCAGGCTCTTCGCCGTATCAAGTTTGAGGAACTCTTTT
ATTTCCAAATGCAGCTGCAGACGCTCAAGTCTGAAAATAGAGTTCAGGGAAGTGGTCTGGTTCTGGATTGGTCTCAGGAA
AAAGTGACAGCAGTTAAAGCAAGTCTTCCTTTTGCCCTGACCCAAGCTCAGGAAAAGAGTTTGCAGGAAATTTTAACTGA
TATGAAGTCCGACCACCACATGAATCGTCTCCTACAAGGAGATGTGGGGAGCGGAAAAACGGTAGTCGCTGGCTTGGCCA
TGTTTGCGGCAGTGACAGCAGGTTATCAGGCTGCCCTAATGGTACCAACAGAAATCCTCGCAGAGCAACACTTTGAGAGT
TTACAGAACCTTTTTCCCAATTTGAAACTGGCTCTCTTGACAGGTTCCTTGAAAGCTGCAGAAAAGAGAGAAGTCTTGGA
GACCATTGCCAAGGGTGAGGCTGATTTGATTATAGGAACTCACGCTCTGATACAAGATGGGGTGGAGTATGCTCGTCTTG
GTTTGATTATTATCGATGAGCAGCACCGTTTTGGTGTAGGGCAAAGGCGTATTTTACGGGAAAAAGGCGACAATCCAGAT
GTCCTCATGATGACGGCGACTCCCATTCCACGGACGCTTGCCATCACAGCCTTTGGAGATATGGATGTTTCCATTATCGA
CCAGATGCCAGCAGGTCGGAAGCCTATTGTGACGCGCTGGATCAAACATGAGCAACTACCTCAGGTCTTGACTTGGTTAG
AGGGGGAAATTCAAAAAGGTTCCCAAGTCTATGTCATCTCTCCTTTGATTGAAGAATCAGAAGCTCTAGATTTGAAAAAT
GCCATTGCCTTATCAGAGGAGTTGACGACTCATTTTGCAGGCAAGACAGAGGTGGCTCTTCTACATGGTAGGATGAAGAG
TGACGAAAAAGACCAGATCATGCAGGATTTCAAGGAGAGAAAGACGGATATTCTGGTTTCGACGACGGTTATTGAGGTTG
GGGTCAACGTTCCCAATGCGACTGTCATGATTATCATGGATGCCGATCGCTTCGGTCTCAGTCAACTTCACCAGCTTAGA
GGTCGTGTCGGTCGGGGGGACAAGCAGTCCTACGCTGTTCTCGTTGCCAATCCCAAGACGGATTCTGGGAAAGACCGCAT
GCGTATCATGACAGAAACGACCAATGGATTTGTCCTTGCGGAGGAAGATTTGAAAATGCGTGGTTCTGGTGAGATTTTTG
GAACCAGACAGTCAGGACTTCCAGAGTTCCAAGTGGCTGATATTATCGAAGATTTTCCGATTTTAGAAGAAGCAAGAAAG
GTTGCTAGCTACATTAGTTCTATAGAAGCTTGGCAAGAAGATCCAGAGTGGCGCATGATTGCCCTTCATCTGGAAAAGAA
AGAACATCTGGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-665)

DEAD/DEAH box helicase (DEAD)

(254-411)

RecG wedge domain (RecG_wedge)

(11-158)

Helicase conserved C-terminal domain (Helicase_C)

(456-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

99.404

100

0.994
  recG/mmsA Streptococcus pneumoniae R36A

99.404

100

0.994
  recG Bacillus subtilis subsp. subtilis str. 168

48.968

100

0.495
  recG Neisseria meningitidis strain C311

38.724

100

0.389