Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R4B61_RS02260 Genome accession   NZ_CP137138
Coordinates   483995..484498 (-) Length   167 a.a.
NCBI ID   WP_413628023.1    Uniprot ID   -
Organism   Fructilactobacillus vespulae strain Mu01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 478995..489498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4B61_RS02240 (R4B61_02225) dnaB 479635..481065 (-) 1431 WP_413628019.1 replicative DNA helicase -
  R4B61_RS02245 (R4B61_02230) rplI 481096..481548 (-) 453 WP_413628020.1 50S ribosomal protein L9 -
  R4B61_RS02250 (R4B61_02235) - 481567..483594 (-) 2028 WP_413628021.1 DHH family phosphoesterase -
  R4B61_RS02255 (R4B61_02240) rpsR 483700..483954 (-) 255 WP_413628022.1 30S ribosomal protein S18 -
  R4B61_RS02260 (R4B61_02245) ssb 483995..484498 (-) 504 WP_413628023.1 single-stranded DNA-binding protein Machinery gene
  R4B61_RS02265 (R4B61_02250) rpsF 484530..484826 (-) 297 WP_413628024.1 30S ribosomal protein S6 -
  R4B61_RS02270 (R4B61_02255) gyrA 485024..487450 (-) 2427 WP_413628279.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18138.71 Da        Isoelectric Point: 4.5657

>NTDB_id=896465 R4B61_RS02260 WP_413628023.1 483995..484498(-) (ssb) [Fructilactobacillus vespulae strain Mu01]
MINTVVLTGRLTRDVDLRYTQSGAAVGTFTLAVDRRFTSANGDREADFVNCVIWRKSAENLANFVHKGTLIGVEGRLQTR
NYENKQGQRVYVTEVVVENFTFLEPRQNGSQGGNNAGNQAPQQNPFGTPDNNAGNNNQNINNGSAGNSADPFAGGDQIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=896465 R4B61_RS02260 WP_413628023.1 483995..484498(-) (ssb) [Fructilactobacillus vespulae strain Mu01]
ATGATTAATACCGTTGTCCTAACCGGACGTTTAACACGAGATGTTGATTTGCGATACACTCAAAGCGGTGCTGCAGTTGG
AACATTTACTCTAGCTGTCGACCGTCGTTTCACCAGTGCTAATGGTGATAGAGAAGCTGACTTCGTCAATTGTGTTATCT
GGCGGAAATCAGCTGAAAACCTTGCCAACTTCGTTCACAAGGGTACTCTTATAGGGGTTGAAGGTCGTTTACAGACTAGA
AACTATGAGAATAAACAAGGCCAACGGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTCACCTTCTTAGAACCACGTCA
AAATGGTTCACAAGGTGGAAACAACGCTGGTAACCAAGCTCCTCAACAAAATCCATTTGGCACTCCCGACAATAATGCTG
GTAACAATAACCAAAACATTAATAATGGTTCTGCAGGTAATTCTGCTGATCCATTTGCCGGTGGTGACCAAATCGACATT
TCCGATGACGATCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.483

100

0.677
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.742

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

63.473

0.365