Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4705_RS05470 Genome accession   NZ_CP137115
Coordinates   1034027..1034785 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20614-6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1029027..1039785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4705_RS05440 comE 1029623..1030375 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  R4705_RS05445 comD/comD1 1030372..1031697 (-) 1326 WP_015511364.1 competence system sensor histidine kinase ComD Regulator
  R4705_RS05450 comC/comC1 1031718..1031843 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R4705_RS05460 rlmH 1032126..1032605 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4705_RS05465 htrA 1032788..1033969 (+) 1182 WP_000681597.1 S1C family serine protease Regulator
  R4705_RS05470 spo0J 1034027..1034785 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  R4705_RS05475 dnaA 1034998..1036359 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4705_RS05480 dnaN 1036518..1037654 (+) 1137 WP_000581155.1 DNA polymerase III subunit beta -
  R4705_RS05485 - 1037719..1037913 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4705_RS05490 ychF 1037997..1039112 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  R4705_RS05495 pth 1039183..1039752 (+) 570 WP_000163932.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=896274 R4705_RS05470 WP_000410383.1 1034027..1034785(+) (spo0J) [Streptococcus pneumoniae strain 20614-6]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=896274 R4705_RS05470 WP_000410383.1 1034027..1034785(+) (spo0J) [Streptococcus pneumoniae strain 20614-6]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
GCTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATTCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504