Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   R4704_RS04210 Genome accession   NZ_CP137109
Coordinates   802859..803869 (-) Length   336 a.a.
NCBI ID   WP_033705596.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 11012     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 797859..808869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4704_RS04190 - 799205..799498 (-) 294 WP_000977371.1 hypothetical protein -
  R4704_RS04195 - 799660..800112 (+) 453 WP_000079148.1 universal stress protein -
  R4704_RS04200 - 800147..801535 (-) 1389 WP_033705594.1 Cof-type HAD-IIB family hydrolase -
  R4704_RS04205 - 801601..802563 (+) 963 WP_001124783.1 asparaginase -
  R4704_RS04210 ccpA 802859..803869 (-) 1011 WP_033705596.1 catabolite control protein A Regulator
  R4704_RS04215 - 804294..804893 (-) 600 WP_033705598.1 response regulator transcription factor -
  R4704_RS04220 - 804895..805992 (-) 1098 WP_033705599.1 sensor histidine kinase -
  R4704_RS04225 - 805992..806729 (-) 738 Protein_819 ABC transporter permease -
  R4704_RS04230 - 806731..807615 (-) 885 WP_001055978.1 ABC transporter ATP-binding protein -
  R4704_RS04235 - 807602..807796 (-) 195 WP_000820189.1 hypothetical protein -
  R4704_RS04240 - 807793..807999 (-) 207 Protein_822 hypothetical protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37085.07 Da        Isoelectric Point: 5.3212

>NTDB_id=895786 R4704_RS04210 WP_033705596.1 802859..803869(-) (ccpA) [Streptococcus pneumoniae strain 11012]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIYMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKEILKKAGITYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERSSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=895786 R4704_RS04210 WP_033705596.1 802859..803869(-) (ccpA) [Streptococcus pneumoniae strain 11012]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTATATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCCAGT
GTCAATATTGACTATAAGCAAGCAACAATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAATCTTGAAAAAAGCAGGAATCACTT
ATAGTGAGGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGCCTTAGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAGGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTAGCTCAACACGAAAACGTAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

99.405

100

0.994
  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568