Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R4711_RS07530 Genome accession   NZ_CP137107
Coordinates   1462180..1462890 (-) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain 15H4024     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1457180..1467890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4711_RS07510 amiD 1457762..1458688 (+) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  R4711_RS07515 amiE 1458697..1459764 (+) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  R4711_RS07520 amiF 1459775..1460701 (+) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  R4711_RS07530 treR 1462180..1462890 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  R4711_RS07535 treP 1463075..1465042 (+) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  R4711_RS07540 treC 1465220..1466845 (+) 1626 WP_000171227.1 alpha,alpha-phosphotrehalase -
  R4711_RS07545 - 1467101..1467349 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=895666 R4711_RS07530 WP_000760673.1 1462180..1462890(-) (treR) [Streptococcus pneumoniae strain 15H4024]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=895666 R4711_RS07530 WP_000760673.1 1462180..1462890(-) (treR) [Streptococcus pneumoniae strain 15H4024]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593