Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AAHT64_RS15305 Genome accession   NZ_CP155054
Coordinates   2965122..2965766 (-) Length   214 a.a.
NCBI ID   WP_003245647.1    Uniprot ID   O07528
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2960122..2970766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS15280 (AAHT64_15280) nsrR 2961720..2962160 (+) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  AAHT64_RS15285 (AAHT64_15285) lytF 2962312..2963778 (+) 1467 WP_019712924.1 peptidoglycan endopeptidase LytF -
  AAHT64_RS15290 (AAHT64_15290) yhdC 2963820..2964143 (-) 324 WP_003233371.1 YqzG/YhdC family protein -
  AAHT64_RS15295 (AAHT64_15295) yhdB 2964344..2964586 (+) 243 WP_003233373.1 YhdB family protein -
  AAHT64_RS15300 (AAHT64_15300) yhdA 2964601..2965125 (-) 525 WP_003244703.1 FMN-dependent NADPH-azoreductase -
  AAHT64_RS15305 (AAHT64_15305) vraR 2965122..2965766 (-) 645 WP_003245647.1 two-component system response regulator YhcZ Regulator
  AAHT64_RS15310 (AAHT64_15310) yhcY 2965763..2966902 (-) 1140 WP_003245750.1 two-component system sensor histidine kinase YhcY -
  AAHT64_RS15315 (AAHT64_15315) pgcA 2967051..2968796 (-) 1746 WP_003244986.1 phosphoglucomutase -
  AAHT64_RS15320 (AAHT64_15320) glpD 2968928..2970595 (-) 1668 WP_003233382.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24022.59 Da        Isoelectric Point: 6.3034

>NTDB_id=895573 AAHT64_RS15305 WP_003245647.1 2965122..2965766(-) (vraR) [Bacillus subtilis subsp. subtilis strain R38]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEI
ANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=895573 AAHT64_RS15305 WP_003245647.1 2965122..2965766(-) (vraR) [Bacillus subtilis subsp. subtilis strain R38]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCCCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATT
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGACAC
ATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAAATA
GCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAATCT
TTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCTCAA
AATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O07528

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.664

0.439
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.411