Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   AAHT64_RS12280 Genome accession   NZ_CP155054
Coordinates   2404721..2405170 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2399721..2410170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS12250 (AAHT64_12250) sepM 2399800..2400825 (-) 1026 WP_003245451.1 protease DdcP Regulator
  AAHT64_RS12255 (AAHT64_12255) ylbK 2400827..2401609 (-) 783 WP_003232221.1 patatin family protein -
  AAHT64_RS12260 (AAHT64_12260) spoVV 2401790..2403016 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  AAHT64_RS12265 (AAHT64_12265) coaD 2403027..2403512 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AAHT64_RS12270 (AAHT64_12270) rsmD 2403517..2404071 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AAHT64_RS12275 (AAHT64_12275) ylbG 2404394..2404666 (-) 273 WP_009967171.1 YlbG family protein -
  AAHT64_RS12280 (AAHT64_12280) ylbF 2404721..2405170 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AAHT64_RS12285 (AAHT64_12285) ylbE 2405286..2405525 (-) 240 WP_003232231.1 YlbE-like family protein -
  AAHT64_RS12290 (AAHT64_12290) ylbD 2405541..2405939 (-) 399 WP_003232233.1 YlbD family protein -
  AAHT64_RS12295 (AAHT64_12295) ylbC 2406171..2407211 (-) 1041 WP_003245434.1 CAP domain-containing protein -
  AAHT64_RS12300 (AAHT64_12300) ylbB 2407295..2407741 (-) 447 WP_003221362.1 CBS domain-containing protein -
  AAHT64_RS12305 (AAHT64_12305) ylbA 2407881..2408243 (+) 363 WP_003232238.1 YugN family protein -
  AAHT64_RS12310 (AAHT64_12310) ctaG 2408275..2409168 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  AAHT64_RS12315 (AAHT64_12315) ctaF 2409195..2409527 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  AAHT64_RS12320 (AAHT64_12320) ctaE 2409530..2410153 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=895542 AAHT64_RS12280 WP_003221370.1 2404721..2405170(-) (ylbF) [Bacillus subtilis subsp. subtilis strain R38]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=895542 AAHT64_RS12280 WP_003221370.1 2404721..2405170(-) (ylbF) [Bacillus subtilis subsp. subtilis strain R38]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1