Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4699_RS09225 Genome accession   NZ_CP137105
Coordinates   1828702..1829460 (-) Length   252 a.a.
NCBI ID   WP_050087436.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2092     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1823702..1834460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4699_RS09200 pth 1823735..1824304 (-) 570 WP_000163928.1 aminoacyl-tRNA hydrolase -
  R4699_RS09205 ychF 1824375..1825490 (-) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  R4699_RS09210 - 1825574..1825768 (-) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4699_RS09215 dnaN 1825833..1826969 (-) 1137 WP_000581155.1 DNA polymerase III subunit beta -
  R4699_RS09220 dnaA 1827128..1828489 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4699_RS09225 spo0J 1828702..1829460 (-) 759 WP_050087436.1 ParB/RepB/Spo0J family partition protein Regulator
  R4699_RS09230 htrA 1829518..1830699 (-) 1182 WP_000681597.1 S1C family serine protease Regulator
  R4699_RS09235 rlmH 1830882..1831361 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4699_RS09245 comC/comC1 1831643..1831768 (+) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R4699_RS09250 comD 1831789..1833113 (+) 1325 Protein_1811 competence system sensor histidine kinase ComD -
  R4699_RS09255 comE 1833110..1833862 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29100.45 Da        Isoelectric Point: 8.0022

>NTDB_id=895500 R4699_RS09225 WP_050087436.1 1828702..1829460(-) (spo0J) [Streptococcus pneumoniae strain 16H2092]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEACAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=895500 R4699_RS09225 WP_050087436.1 1828702..1829460(-) (spo0J) [Streptococcus pneumoniae strain 16H2092]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCATG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508