Detailed information NTG0089539

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: LDO80_RS07600
• Genome accession: NZ_AP024933
• Coordinates: 1419252..1421525 (+)
• Length: 757 a.a.
• NCBI ID: WP_223970988.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA3-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1414252..1426525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO80_RS07570 (TthAA37_15000)	-	1414363..1414854 (+)	492	WP_143586973.1	DUF5317 domain-containing protein	-
LDO80_RS07575 (TthAA37_15010)	-	1414909..1415913 (+)	1005	WP_143586066.1	homoisocitrate dehydrogenase	-
LDO80_RS07580 (TthAA37_15020)	pilM	1416048..1417181 (+)	1134	WP_143586068.1	type IV pilus assembly protein PilM	Machinery gene
LDO80_RS07585 (TthAA37_15030)	pilN	1417174..1417797 (+)	624	WP_011228637.1	competence protein	Machinery gene
LDO80_RS07590 (TthAA37_15040)	pilO	1417787..1418368 (+)	582	WP_143586070.1	type 4a pilus biogenesis protein PilO	Machinery gene
LDO80_RS07595 (TthAA37_15050)	pilW	1418365..1419255 (+)	891	WP_143586072.1	competence protein	Machinery gene
LDO80_RS07600 (TthAA37_15060)	pilQ	1419252..1421525 (+)	2274	WP_223970988.1	secretin N-terminal domain-containing protein	Machinery gene
LDO80_RS07605 (TthAA37_15070)	aroC	1421584..1422735 (+)	1152	WP_143586076.1	chorismate synthase	-
LDO80_RS07610 (TthAA37_15080)	-	1422760..1423314 (+)	555	WP_143586078.1	shikimate kinase	-
LDO80_RS07615 (TthAA37_15090)	-	1423292..1424338 (+)	1047	WP_143586080.1	3-dehydroquinate synthase	-
LDO80_RS07620 (TthAA37_15100)	rsmF	1424384..1425754 (-)	1371	WP_143586082.1	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	-
LDO80_RS07625 (TthAA37_15110)	acpS	1425807..1426184 (+)	378	WP_143586084.1	holo-ACP synthase	-
LDO80_RS07630 (TthAA37_15120)	-	1426162..1426515 (-)	354	WP_143586086.1	DUF4870 domain-containing protein	-

Sequence

Protein

• Length: 757 a.a.
• Molecular weight: 82765.75 Da
• Isoelectric Point: 5.0770

>NTDB_id=89539 LDO80_RS07600 WP_223970988.1 1419252..1421525(+) (pilQ) [Thermus thermophilus strain AA3-7]
MKSAWIRAAVIALAGLGAFGLAGSFPEEPRFQAPVNLKVSESQVEAGQTLPLDVVLEALARSVGLQPLIYRAYDTSGDPA
KAQPPLPNIKLDFQGKPFREVWDLLFATYGNQYGLDYLFLPPDVVVVAPTQVITALVDAPSRTGAMERRPYIVGIPEIAY
KRTETDAQGQTRNVVNIEGAKAWVQNDLLPFLSREAAGLNVNWIVVEEGGRLKAVLSVLATPEQHARFSDILQRAGIDFR
PLPALAQPKPRVEKTYTLTYATFPDLLAFLQSRLPEAQISVVPTNPQRAIVLATEEDHARLSELLKTADVPKTVRRVYAL
QNLTFREAQERLKPLLEKDLKGARLESLPGNPKALLLEAPEAEHALFAEILKALDVPPQAPEAPQEATLRRLYPLRYANA
EQVAPFLAREVPGIVVQTVPGQPVLSVRGTEAQLREVESLLAQIDRPPEQGPPVFQRAYQLSNAKAVELAQVLQEALKAR
QAQNQGQQNQALPTREATVVADPRTNTLIVTGTQEDLALVEGLIPKLDQPVPQVSLRVRIQEVQSNLTRSLGLKWNSIAG
GNVAASILDSGLSLIFDSTRSLAALNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVEGNVERVPFD
IGLIVEVTPQITADGQILLNIRAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGGLTSQESNQSQQGVPLLMD
IPLIGELFKQRTNESTDKELLVVITADILKETASANP

Nucleotide

• Length: 2274 bp

>NTDB_id=89539 LDO80_RS07600 WP_223970988.1 1419252..1421525(+) (pilQ) [Thermus thermophilus strain AA3-7]
ATGAAGAGCGCGTGGATCCGTGCGGCCGTGATCGCCCTCGCAGGGCTAGGGGCTTTTGGCCTTGCGGGGAGCTTTCCCGA
GGAGCCCCGCTTCCAGGCCCCGGTGAACCTCAAGGTCTCGGAATCCCAGGTCGAAGCGGGCCAGACCCTGCCTCTGGACG
TGGTCCTCGAGGCCCTGGCGCGAAGCGTGGGGCTCCAGCCCCTCATCTACCGGGCCTACGATACAAGCGGGGACCCCGCC
AAGGCCCAGCCCCCCCTGCCCAACATCAAGCTGGACTTCCAGGGCAAGCCCTTCCGGGAGGTCTGGGACCTCCTCTTCGC
CACCTACGGCAACCAGTACGGCCTGGACTACCTCTTCCTGCCCCCCGACGTGGTGGTGGTGGCCCCCACCCAGGTGATCA
CCGCCCTGGTGGACGCCCCGAGCCGCACGGGGGCCATGGAGCGCAGGCCCTACATCGTGGGCATCCCCGAGATCGCCTAC
AAGCGCACGGAGACGGATGCCCAGGGCCAGACCCGCAACGTGGTCAACATTGAGGGCGCCAAGGCCTGGGTCCAGAACGA
CCTCCTCCCCTTCCTCTCCCGGGAGGCCGCGGGGCTCAACGTGAACTGGATCGTGGTGGAGGAGGGCGGGAGGCTCAAGG
CCGTCCTCTCCGTTCTCGCCACCCCCGAGCAACACGCCCGCTTCTCCGACATCCTGCAGCGGGCCGGGATTGACTTCCGC
CCCCTCCCCGCCCTGGCCCAGCCCAAGCCCCGGGTGGAGAAGACCTACACCCTCACCTACGCCACCTTCCCCGACCTCCT
CGCCTTCCTCCAGTCCCGCCTCCCCGAGGCCCAGATCAGCGTGGTCCCCACCAACCCCCAAAGGGCCATCGTCCTCGCCA
CCGAGGAGGACCACGCCCGCTTGAGCGAGCTTCTGAAGACGGCCGACGTCCCCAAGACCGTCCGCCGGGTCTACGCCCTG
CAGAACCTCACCTTCAGGGAGGCCCAGGAGCGCCTAAAGCCCCTCCTGGAGAAGGACCTCAAGGGGGCCCGCCTGGAGAG
CCTCCCCGGCAACCCCAAGGCCCTCCTCCTCGAGGCCCCCGAGGCGGAGCACGCCCTCTTCGCCGAGATCCTGAAGGCCC
TGGACGTCCCCCCCCAGGCCCCCGAAGCCCCCCAGGAGGCCACCTTGCGGCGCCTCTACCCCCTGCGCTACGCCAACGCC
GAGCAGGTGGCCCCCTTCCTCGCCCGGGAGGTGCCGGGGATCGTGGTCCAGACCGTCCCCGGCCAACCCGTCCTCTCGGT
GCGGGGCACGGAAGCGCAGCTTAGGGAGGTGGAAAGCCTCCTCGCCCAGATTGACCGCCCCCCGGAGCAGGGCCCTCCCG
TGTTCCAGCGGGCCTACCAGCTCTCCAACGCCAAGGCGGTGGAGCTCGCCCAGGTGCTCCAGGAGGCGCTCAAGGCCCGG
CAGGCCCAGAACCAGGGCCAGCAGAACCAGGCCCTCCCCACCCGGGAGGCCACGGTGGTGGCCGACCCCAGGACCAACAC
CCTCATCGTCACCGGCACCCAGGAGGACCTCGCCCTGGTGGAGGGCCTCATCCCCAAGCTGGACCAGCCTGTGCCCCAGG
TTTCCTTGCGGGTGCGCATCCAGGAGGTCCAGTCCAACCTGACCCGTAGCCTCGGCCTCAAGTGGAACAGCATCGCCGGC
GGCAACGTGGCGGCCAGCATCCTGGACTCGGGCCTTTCCCTCATCTTTGACTCCACGCGAAGCCTCGCCGCCCTCAACAT
CATGGCCACCCTGGACGCCCTGCAGCAACAGGGCCTCTCCCGGGCCCTCCGGGACGTGAACCAGACCGTCCTCAACAACC
AGACCGCCCGCCTGCAGTCCGGCGAGACCTTCTTCATCCGGCGGGTGGTGGAGGGGAACGTGGAGCGGGTGCCCTTTGAC
ATCGGCCTCATCGTGGAGGTCACGCCCCAGATCACCGCCGACGGCCAGATCCTCCTCAACATCAGGGCCGAGGTCTCGGG
GAACGTCCAGCGCAACCCCGTGGACGGGGACGTGGACCGCTTCACCAAGCAGGTGGTGACCACCACCCTAAGGGTCAAAG
ACGGGGAGACCGTGGTCCTCGGGGGCCTCACCTCCCAGGAGTCCAACCAGAGCCAGCAGGGGGTGCCCCTCCTCATGGAC
ATCCCCCTGATCGGCGAGCTCTTCAAGCAGCGGACGAACGAGAGCACCGACAAGGAGCTTCTGGTGGTGATCACCGCCGA
CATCCTCAAGGAGACGGCCTCGGCGAACCCCTAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (457-533)

• Bacterial type II/III secretion system short domain (Secretin_N) (391-450)

• Bacterial type II and III secretion system protein (Secretin) (593-750)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Thermus thermophilus HB27	96.962	100	0.97