Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | LDO80_RS07590 | Genome accession | NZ_AP024933 |
| Coordinates | 1417787..1418368 (+) | Length | 193 a.a. |
| NCBI ID | WP_143586070.1 | Uniprot ID | A0AAD1NYJ2 |
| Organism | Thermus thermophilus strain AA3-7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1412787..1423368
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO80_RS07565 (TthAA37_14990) | - | 1412906..1414312 (+) | 1407 | WP_224065303.1 | HD-GYP domain-containing protein | - |
| LDO80_RS07570 (TthAA37_15000) | - | 1414363..1414854 (+) | 492 | WP_143586973.1 | DUF5317 domain-containing protein | - |
| LDO80_RS07575 (TthAA37_15010) | - | 1414909..1415913 (+) | 1005 | WP_143586066.1 | homoisocitrate dehydrogenase | - |
| LDO80_RS07580 (TthAA37_15020) | pilM | 1416048..1417181 (+) | 1134 | WP_143586068.1 | type IV pilus assembly protein PilM | Machinery gene |
| LDO80_RS07585 (TthAA37_15030) | pilN | 1417174..1417797 (+) | 624 | WP_011228637.1 | competence protein | Machinery gene |
| LDO80_RS07590 (TthAA37_15040) | pilO | 1417787..1418368 (+) | 582 | WP_143586070.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| LDO80_RS07595 (TthAA37_15050) | pilW | 1418365..1419255 (+) | 891 | WP_143586072.1 | competence protein | Machinery gene |
| LDO80_RS07600 (TthAA37_15060) | pilQ | 1419252..1421525 (+) | 2274 | WP_223970988.1 | secretin N-terminal domain-containing protein | Machinery gene |
| LDO80_RS07605 (TthAA37_15070) | aroC | 1421584..1422735 (+) | 1152 | WP_143586076.1 | chorismate synthase | - |
| LDO80_RS07610 (TthAA37_15080) | - | 1422760..1423314 (+) | 555 | WP_143586078.1 | shikimate kinase | - |
Sequence
Protein
Download Length: 193 a.a. Molecular weight: 21340.64 Da Isoelectric Point: 6.4566
>NTDB_id=89537 LDO80_RS07590 WP_143586070.1 1417787..1418368(+) (pilO) [Thermus thermophilus strain AA3-7]
MLARLGQREWALLAMVLTALLGLLWYYLLIVPTRQEIATVRQEIDRLTIERNRGLQAQRALPELRATIAALQAQRLAFLR
ALPREERLAEVLSEVLQDAEASGVVVRSFTRSRTSAPVPEVRAVNLALALEAPFPETYAYLRRLEDLSRFSTLSGLNLSV
QSQEANPTLATSLTLTVYVLAQGVEAETGGSTP
MLARLGQREWALLAMVLTALLGLLWYYLLIVPTRQEIATVRQEIDRLTIERNRGLQAQRALPELRATIAALQAQRLAFLR
ALPREERLAEVLSEVLQDAEASGVVVRSFTRSRTSAPVPEVRAVNLALALEAPFPETYAYLRRLEDLSRFSTLSGLNLSV
QSQEANPTLATSLTLTVYVLAQGVEAETGGSTP
Nucleotide
Download Length: 582 bp
>NTDB_id=89537 LDO80_RS07590 WP_143586070.1 1417787..1418368(+) (pilO) [Thermus thermophilus strain AA3-7]
GTGCTCGCTAGGCTAGGACAGCGGGAGTGGGCCCTCCTGGCCATGGTCCTCACCGCCCTCCTGGGGCTCCTCTGGTACTA
CCTGCTCATCGTGCCCACGAGGCAGGAGATCGCGACCGTCCGGCAGGAGATTGACCGCCTCACCATAGAGCGCAACCGCG
GGCTCCAGGCCCAGCGGGCCCTTCCCGAGCTCCGCGCCACCATCGCCGCCCTTCAGGCCCAAAGGCTCGCCTTCCTCCGG
GCCCTGCCCCGGGAGGAAAGGCTCGCCGAGGTCCTCTCCGAGGTGCTCCAGGACGCGGAGGCAAGCGGGGTGGTGGTCCG
AAGCTTCACCCGAAGCCGCACCTCGGCCCCGGTGCCCGAGGTGCGGGCCGTGAACCTGGCCCTGGCCCTCGAGGCCCCCT
TCCCCGAGACCTACGCCTACCTGCGGCGCCTGGAGGACCTCTCCCGCTTCAGCACCCTTTCCGGCCTCAACCTGAGCGTC
CAGAGCCAGGAAGCGAACCCCACCCTCGCCACCAGCCTCACCTTGACCGTCTACGTGCTGGCCCAGGGGGTGGAGGCGGA
AACGGGAGGGAGCACCCCATGA
GTGCTCGCTAGGCTAGGACAGCGGGAGTGGGCCCTCCTGGCCATGGTCCTCACCGCCCTCCTGGGGCTCCTCTGGTACTA
CCTGCTCATCGTGCCCACGAGGCAGGAGATCGCGACCGTCCGGCAGGAGATTGACCGCCTCACCATAGAGCGCAACCGCG
GGCTCCAGGCCCAGCGGGCCCTTCCCGAGCTCCGCGCCACCATCGCCGCCCTTCAGGCCCAAAGGCTCGCCTTCCTCCGG
GCCCTGCCCCGGGAGGAAAGGCTCGCCGAGGTCCTCTCCGAGGTGCTCCAGGACGCGGAGGCAAGCGGGGTGGTGGTCCG
AAGCTTCACCCGAAGCCGCACCTCGGCCCCGGTGCCCGAGGTGCGGGCCGTGAACCTGGCCCTGGCCCTCGAGGCCCCCT
TCCCCGAGACCTACGCCTACCTGCGGCGCCTGGAGGACCTCTCCCGCTTCAGCACCCTTTCCGGCCTCAACCTGAGCGTC
CAGAGCCAGGAAGCGAACCCCACCCTCGCCACCAGCCTCACCTTGACCGTCTACGTGCTGGCCCAGGGGGTGGAGGCGGA
AACGGGAGGGAGCACCCCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Thermus thermophilus HB27 |
99.482 |
100 |
0.995 |