Detailed information NTG0089535

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: LDO80_RS07580
• Genome accession: NZ_AP024933
• Coordinates: 1416048..1417181 (+)
• Length: 377 a.a.
• NCBI ID: WP_143586068.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA3-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1411048..1422181

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO80_RS07545 (TthAA37_14970)	-	1411052..1411810 (+)	759	WP_224065302.1	type III pantothenate kinase	-
LDO80_RS07550 (TthAA37_14980)	-	1411773..1412138 (-)	366	WP_172619229.1	hypothetical protein	-
LDO80_RS07565 (TthAA37_14990)	-	1412906..1414312 (+)	1407	WP_224065303.1	HD-GYP domain-containing protein	-
LDO80_RS07570 (TthAA37_15000)	-	1414363..1414854 (+)	492	WP_143586973.1	DUF5317 domain-containing protein	-
LDO80_RS07575 (TthAA37_15010)	-	1414909..1415913 (+)	1005	WP_143586066.1	homoisocitrate dehydrogenase	-
LDO80_RS07580 (TthAA37_15020)	pilM	1416048..1417181 (+)	1134	WP_143586068.1	type IV pilus assembly protein PilM	Machinery gene
LDO80_RS07585 (TthAA37_15030)	pilN	1417174..1417797 (+)	624	WP_011228637.1	competence protein	Machinery gene
LDO80_RS07590 (TthAA37_15040)	pilO	1417787..1418368 (+)	582	WP_143586070.1	type 4a pilus biogenesis protein PilO	Machinery gene
LDO80_RS07595 (TthAA37_15050)	pilW	1418365..1419255 (+)	891	WP_143586072.1	competence protein	Machinery gene
LDO80_RS07600 (TthAA37_15060)	pilQ	1419252..1421525 (+)	2274	WP_223970988.1	secretin N-terminal domain-containing protein	Machinery gene

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41334.90 Da
• Isoelectric Point: 4.3805

>NTDB_id=89535 LDO80_RS07580 WP_143586068.1 1416048..1417181(+) (pilM) [Thermus thermophilus strain AA3-7]
MFKSLSQLFRPRVEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLVEGMVAEPAALAQEIKELLLEARTRKRYVV
TALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEAL
RGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLA
AEEVKRTYGMATIPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLR
GLASLLTDTLGVNFEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGVEPLD

Nucleotide

• Length: 1134 bp

>NTDB_id=89535 LDO80_RS07580 WP_143586068.1 1416048..1417181(+) (pilM) [Thermus thermophilus strain AA3-7]
GTGTTCAAAAGCCTTAGCCAGCTCTTCCGACCCAGGGTTGAGGCCCTGGGGTTGGAGATCGGGGCCTCCGCCCTGAAGCT
CGTGGAGGTGTCCGGGAACCCCCCTGCCCTCAAGGCCCTGGCCTCCCGCCCCACCCCGCCCGGCCTCCTGGTGGAAGGGA
TGGTGGCCGAGCCTGCCGCGTTGGCCCAGGAGATCAAGGAGCTTCTCCTCGAGGCCCGCACCCGCAAGCGCTACGTGGTC
ACCGCCCTCTCCAACCTGGCGGTGATCCTCCGCCCCATCCAGGTCCCCAAGATGCCCCTCAAGGAGATGGAGGAGGCGGT
GCGCTGGGAGGCGGAGCGCTACATTCCCTTCCCCATTGACGAGGTGGTCCTGGACTTCGCCCCCCTGACCCCCCTCTCCG
AGGTGCAGGAGGGGGAGCAGGTCCAGGTGATGGTGGCGGCGGCGCGGCAGGAGGCGGTGGCGGGGGTCCTCGAGGCCCTG
AGGGGGGCGGGGCTCGTCCCCGTGGTGCTGGACGTGAAGCCCTTCGCCGGGCTTTACCCTCTGGAGGCCAGGCTTGCGGA
GGAGCCCGACCGGGTCTTCCTCGTCCTGGACATCGGGGCCGAGAGCACGAGCCTCGTCCTGCTCCGGGGGGACAAGCCCC
TGGCGGTGCGCGTCCTCACCCTCTCGGGCAAGGACTTCACCGAGGCCATCGCCCGAAGCTTCAACCTGGACCTCCTCGCC
GCCGAGGAGGTGAAGCGGACCTACGGGATGGCCACCATCCCCACCGAGGACGAGGAACTCCTCCTGGACTTTGACGCCGA
GCGGGAGCGCTACAGCCCGGGGCGCATCTACGACGCCATCCGCCCGGTGCTGGTGGAACTCACCCAGGAGCTCCGCCGTA
GCCTGGAGTTCTTCCGCATCCAGCTGGAGGAGGCCTCGCCCGAGGTGGGCTACCTCCTGGGCGGGGGGAGCAAGCTCAGG
GGGCTCGCCTCCCTCCTCACCGACACCCTGGGGGTGAACTTTGAGCCCGTCAACCCCTGGGAGGCGGTGGCGGTGGACCC
CAAGCGCTTTGAGTCGGAGCAACTCCAGGAGATCGGGCCGGAGTTCGCCGTGGCCCTGGGCTTGGCGTTGAGGGGGGTGG
AGCCCCTTGATTAG

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (17-372)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Thermus thermophilus HB27	99.204	100	0.992