Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Machinery gene
Locus tag   LDO80_RS06750 Genome accession   NZ_AP024933
Coordinates   1248934..1250610 (+) Length   558 a.a.
NCBI ID   WP_223965554.1    Uniprot ID   A0AAD1NYD1
Organism   Thermus thermophilus strain AA3-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1243934..1255610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO80_RS06725 (TthAA37_13340) - 1245502..1246482 (-) 981 WP_018461695.1 YpdA family putative bacillithiol disulfide reductase -
  LDO80_RS06730 (TthAA37_13350) pilA/pilA1 1246648..1247118 (+) 471 WP_143585821.1 GspH/FimT family protein Machinery gene
  LDO80_RS06735 (TthAA37_13360) - 1247174..1247647 (+) 474 WP_223965551.1 GspH/FimT family protein -
  LDO80_RS06740 (TthAA37_13370) pilA/pilA2 1247665..1248225 (+) 561 WP_267461250.1 type IV pilus modification PilV family protein Machinery gene
  LDO80_RS06745 (TthAA37_13380) pilA/pilA3 1248222..1248923 (+) 702 WP_224065290.1 PilW family protein Machinery gene
  LDO80_RS06750 (TthAA37_13390) comZ 1248934..1250610 (+) 1677 WP_223965554.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  LDO80_RS13220 - 1250828..1250942 (+) 115 Protein_1323 type IV pilin protein -
  LDO80_RS06760 (TthAA37_13410) - 1251625..1252005 (+) 381 WP_223968480.1 DUF1640 domain-containing protein -
  LDO80_RS06765 (TthAA37_13420) - 1252081..1252623 (+) 543 WP_223968482.1 Uma2 family endonuclease -
  LDO80_RS06770 (TthAA37_13430) - 1252646..1252945 (+) 300 WP_008631315.1 nucleotidyltransferase family protein -
  LDO80_RS06775 (TthAA37_13440) - 1252932..1253294 (+) 363 WP_060384345.1 DUF86 domain-containing protein -
  LDO80_RS06780 (TthAA37_13450) - 1253328..1253885 (-) 558 WP_223970927.1 Uma2 family endonuclease -
  LDO80_RS06785 (TthAA37_13460) - 1253904..1254560 (-) 657 WP_124104343.1 chromosome segregation protein ScpA -
  LDO80_RS06790 (TthAA37_13470) trpS 1254557..1255570 (-) 1014 WP_143585847.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 558 a.a.        Molecular weight: 59795.37 Da        Isoelectric Point: 6.4789

>NTDB_id=89534 LDO80_RS06750 WP_223965554.1 1248934..1250610(+) (comZ) [Thermus thermophilus strain AA3-7]
MNRKGIALVATLALMVVIALLVFGTFFTTQIELWTTRNDTTSVQAFYAAEAGLQKYKAALFQQYVWREQQGGTGGGSGCF
TSLARGLDLDRDGTLTPFVNNRLVLAQDEVVTDANGNPVGRYTVTLYKDAEDGQLFTLVSEGTSGGAKARVQATFRISNT
GYLEQAIFAGAGQANKWLNGGATIRGGVYVVGSPNDPDQYVIEANGNFALYNWYDLTTYSEVTNRVEPSYQRAQDLCASL
RVQYGKISVGGSTQIGEPNNKVKGVFVGRGAQDITGENVGVCQNNKGVCTEAMGGFDLSDPPPFPTLDAKLDSDACSAYP
TWRACLQGKAALRIQRIGNVLSVASPSDATLPSSCLQAMESGTLTLDTQSVDCTFTHLDGSRGGFRYTYTGDKKSGQGLL
EVFGDVVLEGIDVVLNRPVDYRAQSGSTKSATLAVLKLSGKGGNLDINGNLLPDATFGLFPNHALGLLAEGDIYQRGQYV
MAPLYAGGTFRVVKDNVLFGSVISNQFCTTSAGNQTQCNAGQKAEVVYIRIPKENRPVLLPSLRGGKPVFQVLSYERR

Nucleotide


Download         Length: 1677 bp        

>NTDB_id=89534 LDO80_RS06750 WP_223965554.1 1248934..1250610(+) (comZ) [Thermus thermophilus strain AA3-7]
GTGAACCGCAAAGGTATCGCCCTTGTAGCCACTTTGGCCCTCATGGTGGTCATCGCCCTCTTGGTCTTCGGCACCTTCTT
CACCACCCAGATAGAGCTCTGGACCACCCGCAACGACACCACCTCGGTTCAGGCCTTCTACGCCGCTGAGGCCGGCCTGC
AGAAGTACAAGGCCGCCCTCTTCCAGCAGTACGTCTGGCGGGAGCAGCAGGGCGGGACGGGCGGAGGTAGCGGCTGCTTC
ACCTCCCTAGCAAGGGGGCTAGACCTGGACCGGGATGGAACCCTCACCCCCTTCGTCAACAACCGGCTGGTCCTGGCGCA
AGACGAGGTGGTCACCGACGCCAACGGCAACCCCGTGGGGCGGTACACGGTAACCCTTTACAAGGACGCCGAAGACGGCC
AGCTCTTCACCTTGGTCTCCGAGGGCACCTCGGGCGGGGCCAAGGCCCGGGTCCAGGCCACCTTCCGCATTAGCAACACG
GGCTACCTGGAGCAGGCCATCTTCGCCGGCGCGGGCCAGGCCAACAAGTGGCTGAACGGCGGGGCCACCATCCGGGGCGG
GGTCTACGTGGTGGGAAGCCCTAACGACCCGGACCAGTACGTCATAGAGGCCAACGGCAACTTCGCCCTCTACAACTGGT
ACGACCTCACCACCTACTCCGAGGTCACCAACCGGGTGGAACCCAGCTACCAGCGGGCCCAGGACCTCTGCGCAAGCCTT
AGGGTGCAGTACGGCAAGATTTCCGTGGGAGGAAGCACCCAGATCGGCGAGCCCAACAACAAGGTGAAGGGGGTCTTCGT
GGGCCGGGGCGCCCAGGACATCACCGGCGAGAACGTGGGGGTCTGCCAGAACAACAAAGGGGTCTGCACCGAGGCCATGG
GGGGCTTTGACCTCTCCGACCCGCCCCCCTTCCCCACCCTGGACGCCAAGCTGGACTCCGACGCCTGCAGCGCCTACCCC
ACCTGGCGGGCCTGCCTCCAGGGCAAGGCCGCCTTAAGAATTCAGCGCATCGGGAACGTCCTCTCCGTGGCCAGCCCGTC
CGACGCCACCTTGCCCTCATCTTGCCTCCAAGCCATGGAGTCCGGCACCCTGACCCTGGACACCCAAAGCGTGGACTGCA
CCTTCACCCATCTGGACGGAAGCCGGGGAGGGTTCAGGTACACCTACACGGGCGACAAGAAGAGCGGGCAGGGGCTTTTG
GAGGTCTTCGGCGACGTGGTGCTGGAGGGTATAGACGTGGTGCTCAACCGGCCCGTGGACTATAGGGCCCAGTCGGGGAG
CACCAAGAGCGCCACCCTTGCGGTGCTGAAGCTTTCTGGAAAAGGCGGCAACCTGGACATCAACGGCAACCTCCTCCCCG
ACGCCACCTTTGGCCTCTTCCCCAACCATGCCCTGGGTCTTCTAGCCGAAGGAGACATCTACCAGCGCGGCCAGTACGTG
ATGGCCCCCCTGTACGCCGGGGGCACCTTCCGGGTGGTGAAGGACAACGTCCTCTTCGGCTCGGTCATTAGCAACCAGTT
CTGCACCACGAGCGCCGGGAACCAAACGCAATGCAACGCCGGCCAAAAGGCCGAGGTGGTCTACATCCGCATCCCCAAGG
AGAACCGCCCCGTGCTCCTGCCGAGCCTCCGCGGGGGGAAGCCTGTCTTCCAGGTGCTGTCCTATGAGCGCCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Thermus thermophilus HB27

92.652

100

0.927

Multiple sequence alignment