Detailed information NTG0089531

Bioinformatically predicted

Overview

• Name: pilA/pilA1
• Type: Machinery gene
• Locus tag: LDO80_RS06730
• Genome accession: NZ_AP024933
• Coordinates: 1246648..1247118 (+)
• Length: 156 a.a.
• NCBI ID: WP_143585821.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AA3-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1241648..1252118

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO80_RS06710 (TthAA37_13310)	ilvC	1242139..1243152 (-)	1014	WP_223968476.1	ketol-acid reductoisomerase	-
LDO80_RS06715 (TthAA37_13320)	ilvN	1243149..1243661 (-)	513	WP_223965549.1	acetolactate synthase small subunit	-
LDO80_RS06720 (TthAA37_13330)	ilvB	1243658..1245346 (-)	1689	WP_223965550.1	biosynthetic-type acetolactate synthase large subunit	-
LDO80_RS06725 (TthAA37_13340)	-	1245502..1246482 (-)	981	WP_018461695.1	YpdA family putative bacillithiol disulfide reductase	-
LDO80_RS06730 (TthAA37_13350)	pilA/pilA1	1246648..1247118 (+)	471	WP_143585821.1	GspH/FimT family protein	Machinery gene
LDO80_RS06735 (TthAA37_13360)	-	1247174..1247647 (+)	474	WP_223965551.1	GspH/FimT family protein	-
LDO80_RS06740 (TthAA37_13370)	pilA/pilA2	1247665..1248225 (+)	561	WP_267461250.1	type IV pilus modification PilV family protein	Machinery gene
LDO80_RS06745 (TthAA37_13380)	pilA/pilA3	1248222..1248923 (+)	702	WP_224065290.1	PilW family protein	Machinery gene
LDO80_RS06750 (TthAA37_13390)	comZ	1248934..1250610 (+)	1677	WP_223965554.1	pilus assembly PilX N-terminal domain-containing protein	Machinery gene
LDO80_RS13220	-	1250828..1250942 (+)	115	Protein_1323	type IV pilin protein	-
LDO80_RS06760 (TthAA37_13410)	-	1251625..1252005 (+)	381	WP_223968480.1	DUF1640 domain-containing protein	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17032.82 Da
• Isoelectric Point: 11.4446

>NTDB_id=89531 LDO80_RS06730 WP_143585821.1 1246648..1247118(+) (pilA/pilA1) [Thermus thermophilus strain AA3-7]
MTRRGLTLLELLLVLGLLGVLLGLALPLLSPNRLALDQAARSLAAQVTRARLEAIRRNAFVGLQVFTEEAGGYLLFVDQN
ANRRYDPGEEFGAVRFGQGEWARVRLDPERSTLGNMPLLFDPRGIPAKPITATLVLTSGSATRKVVISQQGRARVE

Nucleotide

• Length: 471 bp

>NTDB_id=89531 LDO80_RS06730 WP_143585821.1 1246648..1247118(+) (pilA/pilA1) [Thermus thermophilus strain AA3-7]
ATGACGCGGCGGGGCCTTACCCTTTTGGAGCTCCTGCTGGTCTTGGGCCTCCTGGGGGTCCTCCTAGGGCTGGCCCTTCC
ACTTCTTTCCCCCAACCGCCTCGCCCTGGACCAGGCCGCCCGCTCCCTCGCCGCCCAGGTGACCCGGGCAAGGCTCGAGG
CCATCCGCCGGAACGCCTTCGTGGGCCTGCAGGTGTTCACCGAAGAAGCGGGGGGCTATCTGCTCTTCGTGGACCAAAAC
GCGAACCGCCGCTACGACCCCGGGGAGGAGTTCGGCGCGGTCCGCTTCGGCCAGGGAGAGTGGGCCAGGGTGCGTTTGGA
TCCCGAGAGGAGCACCCTCGGCAACATGCCCCTCCTCTTTGACCCCCGGGGCATCCCGGCCAAACCCATCACCGCCACCC
TGGTCCTCACCTCAGGGAGCGCCACCCGCAAGGTAGTTATCTCCCAACAGGGCCGGGCCCGGGTGGAGTGA

Domains

Predicted by InterproScan.

• Type II transport protein GspH (GspH) (39-151)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA/pilA1	Thermus thermophilus HB27	92.913	81.41	0.756