Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AAVB50_RS19975 Genome accession   NZ_CP154923
Coordinates   3746242..3747372 (-) Length   376 a.a.
NCBI ID   WP_345805543.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3741242..3752372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS19930 (AAVB50_19925) cotJC 3741328..3741897 (-) 570 WP_003233850.1 spore coat protein CotJC -
  AAVB50_RS19935 (AAVB50_19930) cotJB 3741912..3742175 (-) 264 WP_003219491.1 spore coat protein CotJB -
  AAVB50_RS19940 (AAVB50_19935) cotJA 3742159..3742407 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  AAVB50_RS19945 (AAVB50_19940) yesF 3742534..3743399 (-) 866 Protein_3868 NAD-dependent epimerase/dehydratase family protein -
  AAVB50_RS19950 (AAVB50_19945) yesE 3743396..3743842 (-) 447 WP_032722988.1 nuclear transport factor 2 family protein -
  AAVB50_RS19955 (AAVB50_19950) yezE 3743921..3744505 (-) 585 WP_024571799.1 TetR/AcrR family transcriptional regulator -
  AAVB50_RS19960 (AAVB50_19955) yeeK 3744620..3745066 (-) 447 WP_015715466.1 spore coat protein YeeK -
  AAVB50_RS19965 (AAVB50_19960) yeeI 3745200..3745919 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AAVB50_RS19970 (AAVB50_19965) phrH 3746079..3746252 (-) 174 WP_339175940.1 phosphatase RapH inhibitor PhrH -
  AAVB50_RS19975 (AAVB50_19970) rapC 3746242..3747372 (-) 1131 WP_345805543.1 response regulator aspartate phosphatase RapH Regulator
  AAVB50_RS19980 (AAVB50_19975) - 3747534..3748556 (-) 1023 WP_345805544.1 hypothetical protein -
  AAVB50_RS19985 (AAVB50_19980) yeeF 3748768..3750777 (+) 2010 WP_345805545.1 ribonuclease YeeF family protein -
  AAVB50_RS19990 (AAVB50_19985) - 3750784..3751272 (+) 489 WP_103672140.1 immunity protein YezG family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43927.27 Da        Isoelectric Point: 6.1156

>NTDB_id=895331 AAVB50_RS19975 WP_345805543.1 3746242..3747372(-) (rapC) [Bacillus subtilis strain FUA2233]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALKLAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQENILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=895331 AAVB50_RS19975 WP_345805543.1 3746242..3747372(-) (rapC) [Bacillus subtilis strain FUA2233]
TTGAGTCAAGCCATACCGTCTTCGCGTGTCGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAAGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTCAAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTCCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAAATATTTTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.426

100

0.404
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.399