Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   R4709_RS09000 Genome accession   NZ_CP137102
Coordinates   1724401..1724871 (+) Length   156 a.a.
NCBI ID   WP_000609607.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H3071-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1719401..1729871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4709_RS08970 - 1719685..1720233 (-) 549 WP_041171102.1 NADPH-dependent FMN reductase -
  R4709_RS08975 - 1720554..1721042 (+) 489 WP_000747254.1 DUF5590 domain-containing protein -
  R4709_RS08980 - 1721039..1722226 (+) 1188 WP_050243341.1 pyridoxal phosphate-dependent aminotransferase -
  R4709_RS08985 - 1722219..1722584 (+) 366 WP_000565224.1 VOC family protein -
  R4709_RS08990 asnS 1722603..1723946 (+) 1344 WP_050218877.1 asparagine--tRNA ligase -
  R4709_RS08995 rpsF 1724099..1724389 (+) 291 WP_001151785.1 30S ribosomal protein S6 -
  R4709_RS09000 ssbA 1724401..1724871 (+) 471 WP_000609607.1 single-stranded DNA-binding protein SsbA Machinery gene
  R4709_RS09005 rpsR 1724903..1725142 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  R4709_RS09010 - 1725437..1726837 (+) 1401 WP_000339024.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  R4709_RS09015 - 1726839..1727198 (+) 360 WP_000689596.1 S1 RNA-binding domain-containing protein -
  R4709_RS09020 - 1727252..1728001 (+) 750 WP_277779643.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  R4709_RS09025 - 1727991..1728290 (+) 300 WP_000349601.1 GIY-YIG nuclease family protein -
  R4709_RS09030 - 1728361..1729296 (+) 936 WP_000036043.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17351.21 Da        Isoelectric Point: 5.2065

>NTDB_id=895291 R4709_RS09000 WP_000609607.1 1724401..1724871(+) (ssbA) [Streptococcus pneumoniae strain 16H3071-2]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=895291 R4709_RS09000 WP_000609607.1 1724401..1724871(+) (ssbA) [Streptococcus pneumoniae strain 16H3071-2]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

69.872

0.372
  ssbB/cilA Streptococcus mitis SK321

52.294

69.872

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae Rx1

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae D39

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae R6

52.294

69.872

0.365