Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   R4703_RS05855 Genome accession   NZ_CP137100
Coordinates   1067364..1068026 (-) Length   220 a.a.
NCBI ID   WP_050201094.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LYP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1062364..1073026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4703_RS05830 - 1062514..1062780 (-) 267 WP_001278167.1 Veg family protein -
  R4703_RS05835 dnaB 1062782..1064134 (-) 1353 WP_050201095.1 replicative DNA helicase -
  R4703_RS05840 rplI 1064178..1064630 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  R4703_RS05845 - 1064627..1066600 (-) 1974 WP_044790958.1 DHH family phosphoesterase -
  R4703_RS05850 hpf 1066736..1067284 (-) 549 WP_000599104.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  R4703_RS05855 comFC/cflB 1067364..1068026 (-) 663 WP_050201094.1 ComF family protein Machinery gene
  R4703_RS05860 comFA/cflA 1068023..1069321 (-) 1299 WP_000867608.1 DEAD/DEAH box helicase Machinery gene
  R4703_RS05865 - 1069377..1070012 (+) 636 WP_000395739.1 YigZ family protein -
  R4703_RS05870 cysK 1070297..1071217 (+) 921 WP_000029860.1 cysteine synthase A -
  R4703_RS05875 - 1071292..1071830 (-) 539 Protein_1118 transposase -
  R4703_RS05880 - 1071803..1072111 (+) 309 Protein_1119 transposase -
  R4703_RS05885 tnpB 1072252..1072575 (-) 324 WP_000973416.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25271.12 Da        Isoelectric Point: 7.3688

>NTDB_id=895112 R4703_RS05855 WP_050201094.1 1067364..1068026(-) (comFC/cflB) [Streptococcus pneumoniae strain LYP]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEATGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=895112 R4703_RS05855 WP_050201094.1 1067364..1068026(-) (comFC/cflB) [Streptococcus pneumoniae strain LYP]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAACAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(152-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae Rx1

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae D39

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae R6

99.091

100

0.991
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914
  comFC/cflB Streptococcus mitis SK321

90.909

100

0.909