Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4703_RS06030 Genome accession   NZ_CP137100
Coordinates   1099247..1100005 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LYP     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094247..1105005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4703_RS06000 comE 1094844..1095596 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  R4703_RS06005 comD/comD1 1095593..1096918 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  R4703_RS06010 comC/comC1 1096939..1097064 (-) 126 WP_050250685.1 competence-stimulating peptide ComC Regulator
  R4703_RS06020 rlmH 1097346..1097825 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4703_RS06025 htrA 1098008..1099189 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  R4703_RS06030 spo0J 1099247..1100005 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  R4703_RS06035 dnaA 1100218..1101579 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4703_RS06040 dnaN 1101738..1102874 (+) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  R4703_RS06045 - 1102939..1103133 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4703_RS06050 - 1103563..1103721 (-) 159 WP_164993553.1 hypothetical protein -
  R4703_RS06055 - 1103928..1104188 (-) 261 WP_001863363.1 hypothetical protein -
  R4703_RS06060 - 1104516..1104659 (+) 144 WP_001008139.1 hypothetical protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=895118 R4703_RS06030 WP_000410383.1 1099247..1100005(+) (spo0J) [Streptococcus pneumoniae strain LYP]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=895118 R4703_RS06030 WP_000410383.1 1099247..1100005(+) (spo0J) [Streptococcus pneumoniae strain LYP]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGTTTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504