Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   R3L04_RS06000 Genome accession   NZ_CP137075
Coordinates   1233285..1234511 (-) Length   408 a.a.
NCBI ID   WP_000279215.1    Uniprot ID   A0A0H5FGB3
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1228285..1239511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS05970 (R3L04_05980) - 1228317..1229627 (+) 1311 WP_000753286.1 tetratricopeptide repeat protein -
  R3L04_RS05975 (R3L04_05985) - 1229704..1230030 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  R3L04_RS05980 (R3L04_05990) rlmB 1230132..1230881 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  R3L04_RS05985 (R3L04_05995) - 1230916..1231830 (+) 915 WP_000075015.1 DMT family transporter -
  R3L04_RS05990 (R3L04_06000) coaE 1231827..1232423 (-) 597 WP_031957987.1 dephospho-CoA kinase -
  R3L04_RS05995 (R3L04_06005) pilD 1232425..1233285 (-) 861 WP_001152269.1 A24 family peptidase Machinery gene
  R3L04_RS06000 (R3L04_06010) pilC 1233285..1234511 (-) 1227 WP_000279215.1 type II secretion system F family protein Machinery gene
  R3L04_RS06005 (R3L04_06015) pilB 1234541..1236253 (-) 1713 WP_031957988.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R3L04_RS06010 (R3L04_06020) tpiA 1236544..1237338 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  R3L04_RS06015 (R3L04_06025) secG 1237351..1237680 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  R3L04_RS06035 (R3L04_06045) rimP 1238322..1238846 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44950.46 Da        Isoelectric Point: 9.9566

>NTDB_id=894849 R3L04_RS06000 WP_000279215.1 1233285..1234511(-) (pilC) [Acinetobacter baumannii strain SNUBHAB0006]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRISNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=894849 R3L04_RS06000 WP_000279215.1 1233285..1234511(-) (pilC) [Acinetobacter baumannii strain SNUBHAB0006]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAATTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCGCTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTAGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGATCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H5FGB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

100

100

1
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria meningitidis 44/76-A

47.236

97.549

0.461
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36