Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   R3L04_RS06195 Genome accession   NZ_CP137075
Coordinates   1282557..1284785 (-) Length   742 a.a.
NCBI ID   WP_000156657.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1277557..1289785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS06175 (R3L04_06185) - 1277742..1278698 (-) 957 WP_001107916.1 DnaJ C-terminal domain-containing protein -
  R3L04_RS06180 (R3L04_06190) - 1278849..1279460 (-) 612 WP_001105722.1 LysE family translocator -
  R3L04_RS06185 (R3L04_06195) - 1279598..1280473 (-) 876 WP_001281762.1 Hsp33 family molecular chaperone HslO -
  R3L04_RS06190 (R3L04_06200) - 1280639..1282480 (-) 1842 WP_031957991.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  R3L04_RS06195 (R3L04_06205) priA 1282557..1284785 (-) 2229 WP_000156657.1 primosomal protein N' Machinery gene
  R3L04_RS06200 (R3L04_06210) gspF 1284934..1286139 (+) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  R3L04_RS06205 (R3L04_06215) gspG 1286163..1286744 (+) 582 WP_000865304.1 type II secretion system major pseudopilin GspG -
  R3L04_RS06210 (R3L04_06220) - 1287012..1287356 (+) 345 WP_000643174.1 hypothetical protein -
  R3L04_RS06215 (R3L04_06225) - 1287501..1287839 (+) 339 WP_000434937.1 tRNA-binding protein -
  R3L04_RS06220 (R3L04_06230) lnt 1287841..1289400 (-) 1560 WP_001203093.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83918.74 Da        Isoelectric Point: 8.5653

>NTDB_id=894851 R3L04_RS06195 WP_000156657.1 1282557..1284785(-) (priA) [Acinetobacter baumannii strain SNUBHAB0006]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQETFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGNLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=894851 R3L04_RS06195 WP_000156657.1 1282557..1284785(-) (priA) [Acinetobacter baumannii strain SNUBHAB0006]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAAACATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGCGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTATTAAAACGCTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTACAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGTCCATCCCCTGTGCAATTGGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACTCAGCACGTCCTTAATGCACAGCATCAATATCAAGCCTTTTTATTAGATGGTTTAACGGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTATTAGTTCCTGAAATTGGTTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCGGGGTTAAATGACTCTA
AACGCCTACAAGCCTGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTGATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAACAAGAAGGTTTCCGTTACCATGC
GCGTGATGTCGCGCTTTATCGAGGAAATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGACAGTT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGTATTAGTCAGCCTTTAATTGAACAGATTAAAAATACCCTGGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCACATTTTACGTTGCACACTCAGCCTTATTCTTACTTACATTGCCACCACTGTGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAAAAAAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTTCCAGATCATGATGTGATTCGGGTCGATCGTGACAGTACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTGCTCGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTATTGAGTGTCGATATTCGGGCGCCAGAACGTACTGCACA
GTTGATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGAGAACATAAGGGTCATGTTTATTTACAGACTTTAAGGCCGGATC
ACCCTTTACTTACCACACTCATCGAAAAAGATTATCGTGCGGTTGCCAAACAAACGCTGGCTGAACGTAAAGTTGCTTTA
CTCCCCCCTTATCGCTATGCCGTACTTATACGCGCTGAATCGAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGACATTGTTGATATCTGGGGGCCAATTCCAGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAA
TTGGTTCATGCGCCAAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.978

100

0.98