Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   R3L04_RS02515 Genome accession   NZ_CP137075
Coordinates   510765..511247 (-) Length   160 a.a.
NCBI ID   WP_001046421.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505765..516247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS02480 (R3L04_02485) - 505873..506907 (+) 1035 WP_001189446.1 lipase secretion chaperone -
  R3L04_RS02485 (R3L04_02490) - 507022..507963 (+) 942 WP_085916958.1 triacylglycerol lipase -
  R3L04_RS02490 (R3L04_02495) rplS 508015..508383 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  R3L04_RS02495 (R3L04_02500) trmD 508591..509331 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  R3L04_RS02500 (R3L04_02505) rimM 509377..509925 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  R3L04_RS02505 (R3L04_02510) rpsP 509945..510196 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  R3L04_RS02510 (R3L04_02515) pilE 510343..510768 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  R3L04_RS02515 (R3L04_02520) pilY2 510765..511247 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  R3L04_RS02520 (R3L04_02525) pilY1 511260..515114 (-) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  R3L04_RS02525 (R3L04_02530) pilX 515126..515944 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17563.78 Da        Isoelectric Point: 8.4834

>NTDB_id=894828 R3L04_RS02515 WP_001046421.1 510765..511247(-) (pilY2) [Acinetobacter baumannii strain SNUBHAB0006]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=894828 R3L04_RS02515 WP_001046421.1 510765..511247(-) (pilY2) [Acinetobacter baumannii strain SNUBHAB0006]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419