Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   R3L04_RS01805 Genome accession   NZ_CP137075
Coordinates   379771..380655 (-) Length   294 a.a.
NCBI ID   WP_000914782.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374771..385655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS01790 (R3L04_01795) miaB 376618..378069 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  R3L04_RS01795 (R3L04_01800) - 378107..379195 (+) 1089 WP_005119295.1 PhoH family protein -
  R3L04_RS01800 (R3L04_01805) ybeY 379205..379681 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  R3L04_RS01805 (R3L04_01810) tonB2 379771..380655 (-) 885 WP_000914782.1 energy transducer TonB Machinery gene
  R3L04_RS01810 (R3L04_01815) - 380886..381557 (+) 672 WP_001193960.1 hypothetical protein -
  R3L04_RS01815 (R3L04_01820) - 381715..382428 (+) 714 WP_000201549.1 DUF3108 domain-containing protein -
  R3L04_RS01820 (R3L04_01825) - 382501..383076 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  R3L04_RS01825 (R3L04_01830) wrbA 383129..383722 (-) 594 WP_001183361.1 NAD(P)H:quinone oxidoreductase -
  R3L04_RS01830 (R3L04_01835) - 384010..385257 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33653.54 Da        Isoelectric Point: 9.3995

>NTDB_id=894824 R3L04_RS01805 WP_000914782.1 379771..380655(-) (tonB2) [Acinetobacter baumannii strain SNUBHAB0006]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAITIRPTEDVTKHADFLAQADQQGSGA
FREAHWMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEKSQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=894824 R3L04_RS01805 WP_000914782.1 379771..380655(-) (tonB2) [Acinetobacter baumannii strain SNUBHAB0006]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATAACGATTCGTCCTACTGAAGATGTGACCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATTGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGAAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAACTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.639

100

0.986