Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   R3L04_RS02525 Genome accession   NZ_CP137075
Coordinates   515126..515944 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510126..520944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS02510 (R3L04_02515) pilE 510343..510768 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  R3L04_RS02515 (R3L04_02520) pilY2 510765..511247 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  R3L04_RS02520 (R3L04_02525) pilY1 511260..515114 (-) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  R3L04_RS02525 (R3L04_02530) pilX 515126..515944 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  R3L04_RS02530 (R3L04_02535) pilW 515941..516942 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  R3L04_RS02535 (R3L04_02540) pilV 516943..517503 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  R3L04_RS02540 (R3L04_02545) fimU 517497..517970 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  R3L04_RS02545 (R3L04_02550) ispH 518140..519090 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R3L04_RS02550 (R3L04_02555) gmk 519213..519842 (+) 630 WP_000015936.1 guanylate kinase -
  R3L04_RS02555 (R3L04_02560) rpoZ 519915..520193 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  R3L04_RS02560 (R3L04_02565) - 520232..520362 (+) 131 Protein_485 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=894830 R3L04_RS02525 WP_000149374.1 515126..515944(-) (pilX) [Acinetobacter baumannii strain SNUBHAB0006]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=894830 R3L04_RS02525 WP_000149374.1 515126..515944(-) (pilX) [Acinetobacter baumannii strain SNUBHAB0006]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993