Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AAVC70_RS07925 Genome accession   NZ_CP154898
Coordinates   1344392..1346377 (-) Length   661 a.a.
NCBI ID   WP_013353757.1    Uniprot ID   A0A9P1NJ26
Organism   Bacillus amyloliquefaciens strain Fad 97     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1339392..1351377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC70_RS07905 (AAVC70_07905) - 1339578..1340675 (-) 1098 WP_013353753.1 DUF4097 domain-containing protein -
  AAVC70_RS07910 (AAVC70_07910) - 1340700..1341026 (-) 327 WP_025649342.1 hypothetical protein -
  AAVC70_RS07915 (AAVC70_07915) - 1341224..1341463 (+) 240 WP_014471080.1 hypothetical protein -
  AAVC70_RS07920 (AAVC70_07920) uvrA 1341511..1344384 (-) 2874 WP_013353756.1 excinuclease ABC subunit UvrA Machinery gene
  AAVC70_RS07925 (AAVC70_07925) uvrB 1344392..1346377 (-) 1986 WP_013353757.1 excinuclease ABC subunit UvrB Machinery gene
  AAVC70_RS07930 (AAVC70_07930) - 1346553..1346789 (-) 237 WP_003151438.1 CsbA family protein -
  AAVC70_RS07935 (AAVC70_07935) - 1347088..1349589 (+) 2502 WP_014471081.1 PEP/pyruvate-binding domain-containing protein -
  AAVC70_RS07940 (AAVC70_07940) - 1349661..1350245 (+) 585 Protein_1441 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76489.28 Da        Isoelectric Point: 5.2472

>NTDB_id=894667 AAVC70_RS07925 WP_013353757.1 1344392..1346377(-) (uvrB) [Bacillus amyloliquefaciens strain Fad 97]
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRPEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMRENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTPEMIEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITHSM
EIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAAR
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=894667 AAVC70_RS07925 WP_013353757.1 1344392..1346377(-) (uvrB) [Bacillus amyloliquefaciens strain Fad 97]
GTGAAAGATCGTTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGCAAGCGATTGAGAAGCTTGTCAAAGG
CATACAGGAAGGCAGAAAACACCAGACTCTCCTGGGCGCGACAGGGACGGGCAAAACCTTTACCGTGTCCAATTTGATTA
AAGAAGTCAACAAGCCGACACTGGTCATTGCCCATAACAAAACCCTTGCCGGACAGCTGTACAGCGAGTTTAAGGAGTTT
TTTCCGAACAACGCTGTCGAATACTTTGTCAGCTACTACGATTACTATCAGCCGGAGGCGTATGTGCCTCAGACGGATAC
ATTTATAGAGAAAGACGCAAGCATTAACGATGAAATTGATAAACTGAGACACTCCGCCACATCCTCTCTGTTTGAACGGA
GAGATGTCATTATTATCGCGAGTGTATCATGCATATACGGTCTCGGTTCGCCTGAAGAATACCGGGAAATGGTCGTGTCG
CTCAGACCGGAAATGGAGATTGAGCGAAATGAGCTGCTGAGAAAGCTTGTGGATATCCAGTATGCCCGCAATGATATCGA
CTTTCAGCGGGGGACGTTCCGCGTGCGCGGAGACGTTGTGGAAATCTTCCCGGCTTCCCGTGACGAACATTGTATCAGAG
TGGAATTTTTCGGTGATGAAATTGAGCGGATCAGAGAGGTTGACGCTTTGACCGGAGAAATTCTCGGCGACCGCGATCAT
GTCGCGATTTTCCCGGCTTCCCACTTCGTCACACGGGCGGAAAAGATGGAAAAAGCGATTCTGAATATTGAACAGGAGCT
TGAGGAGCGCTTAAAAGTCATGCGCGAAAACGGCAAGCTTCTGGAAGCCCAGCGCCTTGAGCAGCGTACGAGATATGATC
TTGAAATGATGCGGGAAATGGGTTTCTGCTCGGGGATCGAGAACTATTCAAGACACTTGACGCTCCGTCCTCCGGGCTCC
ACGCCGTATACGCTGCTTGATTATTTTCCGGATGATTTTATGATTGTCGTTGATGAATCACACGTGACGATTCCGCAGGT
GCGCGGCATGTTCAACGGTGACCAGGCAAGAAAACAGGTGCTTGTCGATCACGGGTTCCGCCTGCCGTCAGCGCTTGACA
ACCGTCCGCTTCGATTCGAGGAATTTGAAAAGCACATGCACAATATCGTGTACGTCTCTGCTACCCCGGGACCGTATGAA
ATTGAGCATACGCCGGAAATGATCGAGCAGATCATCAGGCCGACGGGACTTCTCGATCCTCTCATTGATGTCCGTCCGAT
CGAAGGGCAGATTGATGATCTGATCGGTGAGATTCAGGCGAGGATTGAACGTAATGAACGCGTGCTCGTGACGACTTTAA
CAAAAAAAATGTCAGAGGACCTGACCGATTATCTGAAGGAAATCGGTATCAAGGTCAATTATCTTCATTCAGAGATTAAG
ACGCTTGAACGGATTGAAATCATCCGTGACCTCCGCCTCGGGAAACATGATGTGTTAATCGGCATCAACCTGCTGAGGGA
AGGGCTTGATATTCCGGAAGTGTCACTTGTCGCCATTCTGGATGCGGATAAAGAAGGCTTCCTTCGTTCCGAGCGGTCGC
TGATTCAGACGATCGGACGGGCGGCCCGGAACGCAGAGGGACGCGTCATCATGTATGCCGATAAAATCACGCATTCGATG
GAAATTGCGATTAATGAAACGAAGCGCCGGCGGGAACAGCAGGAGCGCTTTAACGAAATCCACGGCATTACGCCGCAAAC
GATCAATAAGGAAATCCGCGATGTGATCCGCGCGACGCAGGCCGCTGAGGATAAAGAAGAATATAAAACAAAAGCCGCTC
CTAAGCTGGCGAAGATGACGAAGAAAGAACGCCAGAAAGTCGTTGAGCAAATGGAGCACGAAATGAAAGAAGCGGCCAGA
GCGCTTGATTTCGAACGGGCGGCAGAGCTTCGTGATTTACTGTTAGAGCTAAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(12-130)

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

Ultra-violet resistance protein B (UvrB)

(551-593)

UvrB/uvrC motif (UVR)

(626-659)

UvrB interaction domain (UvrB_inter)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJ26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.472

99.395

0.7
  uvrB Streptococcus pneumoniae R6

70.32

99.395

0.699
  uvrB Streptococcus pneumoniae D39

70.32

99.395

0.699