Detailed information NTG0894583

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: AAVB98_RS15790
• Genome accession: NZ_CP154895
• Coordinates: 3025114..3025719 (+)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens strain Fad 77
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3020114..3030719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVB98_RS15765 (AAVB98_15765)	nadC	3020121..3020969 (+)	849	WP_013353049.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AAVB98_RS15770 (AAVB98_15770)	nadA	3020969..3022072 (+)	1104	WP_061573717.1	quinolinate synthase NadA	-
AAVB98_RS15775 (AAVB98_15775)	safA	3022199..3023350 (+)	1152	WP_013353047.1	spore coat assembly protein SafA	-
AAVB98_RS15780 (AAVB98_15780)	-	3023499..3024092 (+)	594	WP_014470776.1	YhcN/YlaJ family sporulation lipoprotein	-
AAVB98_RS15785 (AAVB98_15785)	-	3024503..3024979 (+)	477	WP_038463270.1	intercompartmental signaling factor BofC	-
AAVB98_RS15790 (AAVB98_15790)	ruvA	3025114..3025719 (+)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
AAVB98_RS15795 (AAVB98_15795)	ruvB	3025730..3026734 (+)	1005	WP_013353043.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AAVB98_RS15800 (AAVB98_15800)	-	3026727..3026927 (+)	201	WP_013353042.1	DUF2905 domain-containing protein	-
AAVB98_RS15805 (AAVB98_15805)	queA	3026953..3027981 (+)	1029	WP_013353041.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
AAVB98_RS15810 (AAVB98_15810)	tgt	3028009..3029154 (+)	1146	WP_013353040.1	tRNA guanosine(34) transglycosylase Tgt	-
AAVB98_RS15815 (AAVB98_15815)	yajC	3029186..3029446 (+)	261	WP_003152695.1	preprotein translocase subunit YajC	-
AAVB98_RS15820 (AAVB98_15820)	-	3029499..3029885 (-)	387	WP_013353039.1	TIGR04086 family membrane protein	-
AAVB98_RS15825 (AAVB98_15825)	-	3030052..3030708 (+)	657	WP_013353038.1	DUF421 domain-containing protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=894583 AAVB98_RS15790 WP_003152683.1 3025114..3025719(+) (ruvA) [Bacillus amyloliquefaciens strain Fad 77]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=894583 AAVB98_RS15790 WP_003152683.1 3025114..3025719(+) (ruvA) [Bacillus amyloliquefaciens strain Fad 77]
GTGATTGAATTCGTGAAGGGGACGATTGATTACGTATCGCCCCAATACATCGTGATTGAAAACGGCGGGATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG
CCTTTTCTTTGTATGGCTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAATGTCACCGGCATCGGTCCG
AAAGGGGCGCTCGCCATTCTCGGTTCCGGTGATCCGGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCTGGTGTGGGCAAAAAAACGGCACGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGATGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGATGAGGCGCTT
GAAGCGCTCAGGGTACTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGACCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408